Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq442 580 1e-160 seq468 226 3e-54 seq453 226 3e-54 >seq442 Length=7801961 Score = 580 bits (642), Expect = 1e-160 Identities = 1245/1837 (68%), Gaps = 29/1837 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| || |||| |||| ||||| || | ||| ||| | || ||||| || || Sbjct 3251599 TCAACAGTAAATTGGATAGCATTTGCAGCAGGTTTACTTCGTAAGTAGTACATGCCTGTC 3251658 Query 36850 TTTAGCCCCAATCTCC-ATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATT 36908 || ||||| || |||| | || || |||||||| ||||| ||| || | ||| | Sbjct 3251659 TTAAGCCC-AAGCTCCCAGCCATAGAAATGCATCGAGGTCATTTTAGCAACAGAAGGTCT 3251717 Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968 || | || || | | |||||||||||||| ||||| || || | || || ||||| Sbjct 3251718 TTCAAAATGAATATTTAAAGATTGACTTTGATCAATAAAAGCTCCACGTTCAGCAGCCAT 3251777 Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028 ||| | |||| |||||||| || |||||||| ||| ||| | ||| || |||| || Sbjct 3251778 TTCCAGAATATTTTTTTGAGGAATTTCCCAAACAGTTCGATACAATTGCTTAATATCCTC 3251837 Query 37029 TGGTAAATCTA-AATG--TTGAATAGAACCATTATGTAACACAATTGTATTCTTT-ATGT 37084 ||| | | || ||| |||||| || || | || | | ||| | |||| | |||| Sbjct 3251838 TGGGATACCTTCAATAGCTTGAATGGAGCCTCTGTGATAAATAATC-TGTTCTCTCATGT 3251896 Query 37085 CATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 | | |||||| | | || | | | ||| | | || || | || || || |||| Sbjct 3251897 CTTCATTCCAAAGTTCTCGATCAGTCAAATCTTTGACAAGATGGTGGTTAACTACTTGAA 3251956 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | || ||||| | |||| || ||||| || || || |||||||||||||| || || | Sbjct 3251957 ATTCACCAGAAAGAACTCGTCGAGTATAGATGTTACTTGTATATGGTTCAATAGATTCGT 3252016 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 | || | || || |||| || ||||| |||||||| || |||| || || || |||| Sbjct 3252017 TGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGGCATGGGCGCTAATAACAGACTGTTTC 3252076 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 | |||||| || |||| | | || || || |||| ||||| | || | ||| Sbjct 3252077 GAAGACCATGTTTAGCAATTTTACTCTTCAGCTCTGTCCAGTCCCACAGATTAGATGG-- 3252134 Query 37325 TCTTTAACC--ACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 | || ||| ||||||||||||| | ||| |||||| || ||||| | ||| || Sbjct 3252135 TGTTACACCCCACATATCATATTGCAAAATCCCTTTAGAAGCGGGAGATCCTGCATAAGT 3252194 Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442 || ||||||||| || ||| || || ||||| | ||| || || ||||||| || Sbjct 3252195 TTCGTAAGGTCCGAGTTCTTCAGCGAGCTCACAACTTGCTTCGAGAGCTCCATAATAGAT 3252254 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAA 37502 ||| || || ||||| | ||| ||| | |||||| ||| || |||| ||| | || Sbjct 3252255 TGTCTCAAAGATTTGGACATTCAATTTACGAGCTTCTGGGCTGTCAAATGGATATCTCAT 3252314 Query 37503 TAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562 ||| | ||| | || || || || ||||| || | || || |||| || || || || Sbjct 3252315 TAAAAGAAATGCGTCTGCTAAGCCTTGAACTCCTAAGCCAATAGGTCGATTCTTTTTGTT 3252374 Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTT 37622 || ||| | ||| | | |||||| | ||||| || || ||||| |||| |||| Sbjct 3252375 TGAATAAGAGGCTTCCTTTAGAGGATAAAAGTTGATCTCAATAATTTTGTTTAAATTTCG 3252434 Query 37623 AACTAGTATTTTCGTAA-TTATTCTCAACTTGTCGAA-CATAAATACGTT-ATTATTAAC 37679 | ||| |||| || || |||| || || | | ||| | |||| Sbjct 3252435 TGTGACCGCTTTGGTAACTTCTTTGAGTCTTGCAAAATCAAATTTTTGTTCCTCGGTAAC 3252494 Query 37680 AAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAA 37739 |||||| |||| | ||||| | |||||||| |||||||||||||| | |||| | Sbjct 3252495 AAATTTTTTCAAGGCTATAGAGGCAAGATTACAAACAGCAACTTCATCAGGGGCACTATA 3252554 Query 37740 TTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGA 37799 || | ||| || || || ||||| | | || ||||| | ||| | |||||||| Sbjct 3252555 TTCAACAATTTCAGTGCACAGATTTGAACACTTGATGGTTCCAAGATTTTTCTGATTGGA 3252614 Query 37800 TTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTC 37859 |||| ||||||| ||||||||| || |||||||| || ||| || || || || Sbjct 3252615 CTTTTCATTACAATGATCTTTATAAAGCATATACGGAACACCAGTTTCCATCTGGGCATC 3252674 Query 37860 GATAATAGATTTCCATAAACTTCTTGCTTTAA--CGATCGCTTTAAtttttttCTTTGTT 37917 || || | || ||| | | || ||||| | | | | || ||||||||| | Sbjct 3252675 AATGATTGCTTGCCAAAGAGCTCGAGCTTTTATTTGCTGATTGTATCTTTTTTCTT--CT 3252732 Query 37918 TCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACAT 37977 || |||| | ||| | || || || |||| || | || ||| ||| || |||||| Sbjct 3252733 TCATATTTAACATAAAGCTTATTGAATTCATCTCCATAAACTTCGAATAGACCAGGACAT 3252792 Query 37978 TCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCA 38037 | | ||||||||| ||| ||| ||||||||||| || || |||||||| | || | Sbjct 3252793 TTGTGTGGACACATAAGACTCCACATTTCATCTTTTTTAACTCGCTCCATAAAAAGATTA 3252852 Query 38038 GGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTT 38097 || ||||| | || ||| |||||| | ||| ||||| || || || ||| Sbjct 3252853 GGCACCCAAAGAGCTAAAAACAAATCTCGAGCTCTCATCTCTTCTTTACCAGTGTTTTTT 3252912 Query 38098 CTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT-TGC 38156 ||||||| ||| ||||| || | |||||| ||||| || || |||||||| | ||| || Sbjct 3252913 CTTAAGCATAGGAAATCAAAGACATCAGCATGCCAAGGCTCAATATAAATAG-CATAAGC 3252971 Query 38157 TCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAA 38216 |||||||| ||| ||| || || || | ||| | | | | | |||| | ||| | | Sbjct 3252972 TCCTGGTCGTTT---ACCCCCTTGGTTGACATAACGAGCAGATTCATTAAACATTTTCAG 3253028 Query 38217 CATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCG 38276 |||||| || | ||||| ||| || ||| | || || || || || ||||| Sbjct 3253029 CATAGGCACGAGACCATCAGAGAAACCATTTGTCCCTCTGATTCGGGTTCCTTTCGCTCG 3253088 Query 38277 --TATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGT 38334 || | | || || | || |||||||| |||| ||| || || ||| || | | Sbjct 3253089 AATACAATGAACATTGAGA--CCAATTCCACCAGCATATTTAGAAATCAAATTACAATCT 3253146 Query 38335 TTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394 || || ||||| |||| ||||| ||||| || ||| | |||| || | |||||||||| Sbjct 3253147 TTCAAAGTATCGGATATTCCTTCAATACTATCTTCCCTCATTGATAAAAGAAAACAACTA 3253206 Query 38395 GACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCAT 38454 || | ||||| || || || || ||||| | |||||||| |||||| | |||||| Sbjct 3253207 GATAGCTGAGGTCGAGGTGTACCAGCATTAAAAAGGGTAGGAGAAGCATGTGTAAACCAT 3253266 Query 38455 TTTTCCGACAAATAATT-ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACC 38513 |||| ||| | ||||| || || | || | || |||||| || ||||| || Sbjct 3253267 TTTTGAGAC-ATTAATTCGTAGGTCTGTAAGGCTGATTCAATATCAGATCCATGAATTCC 3253325 Query 38514 TAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAG 38573 | || || ||||||||||||||||| || ||||| | || |||| ||| |||||| Sbjct 3253326 AACAGCAACTCTCATTAGCATATGTTGCGGCCTTTCAACTACTTTACCATTGATTTTAAG 3253385 Query 38574 TAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 || || ||| |||| || ||||| | ||||||||| Sbjct 3253386 AAGGTATGATCTTTCCAAGGTTTTGAAACCAAAATAA 3253422 >seq468 Length=1118636 Score = 226 bits (250), Expect = 3e-54 Identities = 420/607 (69%), Gaps = 17/607 (3%) Strand=Plus/Plus Query 11614 ATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTC 11673 || |||||| | ||||| ||||||||||||||||| ||||| |||| | || ||||| Sbjct 1106263 ATATTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTC 1106322 Query 11674 ATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAA 11733 ||||| || ||||| || ||||||| || || ||||| | |||||| ||||| || || Sbjct 1106323 GTTAGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAA 1106382 Query 11734 TGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-A 11792 || || || || || || || || ||| |||||| || | | |||||| || | | Sbjct 1106383 AGAGCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGA 1106442 Query 11793 CCTTGTTGC--TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCAT 11850 || || | | |||| ||| | ||||| ||||| || | || ||| | Sbjct 1106443 GACTGATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGAC 1106502 Query 11851 TGTTTCTATAGCGTT--AAATAAA-TGCATTTTTTCTATATTATCTCTTACATATGTATC 11907 ||||| ||||| || ||| ||| | | | || | ||| || | || || || Sbjct 1106503 AGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGTC---AGGATCACTGATGTAAGTGTC 1106559 Query 11908 TATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA 11967 ||| | || || ||||| || || || | ||| || || || |||||||| ||||| || Sbjct 1106560 TATCAGTAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAA 1106619 Query 11968 ACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTAC 12027 |||||| || || | | ||| | ||| | ||||||||| |||||||| |||||||| Sbjct 1106620 ACATCGAGCTTCGGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTAC 1106679 Query 12028 AATACCATCACTAGATGCA---AAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 |||||| || || ||| || ||||| | | || | ||||| | ||| || Sbjct 1106680 AATACCGTC---TGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTC 1106736 Query 12085 TTTAGTTAA-TTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCC 12143 | ||||| ||| |||| ||| ||||||| ||||| || || |||||||| |||| Sbjct 1106737 -ATCGTTAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCC 1106795 Query 12144 AAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAA 12203 | || || | | || |||||||||| ||| |||||| |||||| ||||||||| | Sbjct 1106796 AGAACGAGGCTTCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACA 1106855 Query 12204 TAACGAA 12210 ||| || Sbjct 1106856 CAACAAA 1106862 >seq453 Length=2394413 Score = 226 bits (250), Expect = 3e-54 Identities = 420/607 (69%), Gaps = 17/607 (3%) Strand=Plus/Plus Query 11614 ATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTC 11673 || |||||| | ||||| ||||||||||||||||| ||||| |||| | || ||||| Sbjct 11715 ATATTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTC 11774 Query 11674 ATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAA 11733 ||||| || ||||| || ||||||| || || ||||| | |||||| ||||| || || Sbjct 11775 GTTAGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAA 11834 Query 11734 TGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-A 11792 || || || || || || || || ||| |||||| || | | |||||| || | | Sbjct 11835 AGAGCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGA 11894 Query 11793 CCTTGTTGC--TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCAT 11850 || || | | |||| ||| | ||||| ||||| || | || ||| | Sbjct 11895 GACTGATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGAC 11954 Query 11851 TGTTTCTATAGCGTT--AAATAAA-TGCATTTTTTCTATATTATCTCTTACATATGTATC 11907 ||||| ||||| || ||| ||| | | | || | ||| || | || || || Sbjct 11955 AGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGTC---AGGATCACTGATGTAAGTGTC 12011 Query 11908 TATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA 11967 ||| | || || ||||| || || || | ||| || || || |||||||| ||||| || Sbjct 12012 TATCAGTAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAA 12071 Query 11968 ACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTAC 12027 |||||| || || | | ||| | ||| | ||||||||| |||||||| |||||||| Sbjct 12072 ACATCGAGCTTCGGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTAC 12131 Query 12028 AATACCATCACTAGATGCA---AAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 |||||| || || ||| || ||||| | | || | ||||| | ||| || Sbjct 12132 AATACCGTC---TGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTC 12188 Query 12085 TTTAGTTAA-TTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCC 12143 | ||||| ||| |||| ||| ||||||| ||||| || || |||||||| |||| Sbjct 12189 -ATCGTTAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCC 12247 Query 12144 AAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAA 12203 | || || | | || |||||||||| ||| |||||| |||||| ||||||||| | Sbjct 12248 AGAACGAGGCTTCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACA 12307 Query 12204 TAACGAA 12210 ||| || Sbjct 12308 CAACAAA 12314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468521045945040