Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq442 580 1e-160
seq468 226 3e-54
seq453 226 3e-54
>seq442
Length=7801961
Score = 580 bits (642), Expect = 1e-160
Identities = 1245/1837 (68%), Gaps = 29/1837 (2%)
Strand=Plus/Plus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
||||| || |||| |||| ||||| || | ||| ||| | || ||||| || ||
Sbjct 3251599 TCAACAGTAAATTGGATAGCATTTGCAGCAGGTTTACTTCGTAAGTAGTACATGCCTGTC 3251658
Query 36850 TTTAGCCCCAATCTCC-ATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATT 36908
|| ||||| || |||| | || || |||||||| ||||| ||| || | ||| |
Sbjct 3251659 TTAAGCCC-AAGCTCCCAGCCATAGAAATGCATCGAGGTCATTTTAGCAACAGAAGGTCT 3251717
Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968
|| | || || | | |||||||||||||| ||||| || || | || || |||||
Sbjct 3251718 TTCAAAATGAATATTTAAAGATTGACTTTGATCAATAAAAGCTCCACGTTCAGCAGCCAT 3251777
Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028
||| | |||| |||||||| || |||||||| ||| ||| | ||| || |||| ||
Sbjct 3251778 TTCCAGAATATTTTTTTGAGGAATTTCCCAAACAGTTCGATACAATTGCTTAATATCCTC 3251837
Query 37029 TGGTAAATCTA-AATG--TTGAATAGAACCATTATGTAACACAATTGTATTCTTT-ATGT 37084
||| | | || ||| |||||| || || | || | | ||| | |||| | ||||
Sbjct 3251838 TGGGATACCTTCAATAGCTTGAATGGAGCCTCTGTGATAAATAATC-TGTTCTCTCATGT 3251896
Query 37085 CATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144
| | |||||| | | || | | | ||| | | || || | || || || ||||
Sbjct 3251897 CTTCATTCCAAAGTTCTCGATCAGTCAAATCTTTGACAAGATGGTGGTTAACTACTTGAA 3251956
Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204
| || ||||| | |||| || ||||| || || || |||||||||||||| || || |
Sbjct 3251957 ATTCACCAGAAAGAACTCGTCGAGTATAGATGTTACTTGTATATGGTTCAATAGATTCGT 3252016
Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264
| || | || || |||| || ||||| |||||||| || |||| || || || ||||
Sbjct 3252017 TGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGGCATGGGCGCTAATAACAGACTGTTTC 3252076
Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324
| |||||| || |||| | | || || || |||| ||||| | || | |||
Sbjct 3252077 GAAGACCATGTTTAGCAATTTTACTCTTCAGCTCTGTCCAGTCCCACAGATTAGATGG-- 3252134
Query 37325 TCTTTAACC--ACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382
| || ||| ||||||||||||| | ||| |||||| || ||||| | ||| ||
Sbjct 3252135 TGTTACACCCCACATATCATATTGCAAAATCCCTTTAGAAGCGGGAGATCCTGCATAAGT 3252194
Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442
|| ||||||||| || ||| || || ||||| | ||| || || ||||||| ||
Sbjct 3252195 TTCGTAAGGTCCGAGTTCTTCAGCGAGCTCACAACTTGCTTCGAGAGCTCCATAATAGAT 3252254
Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAA 37502
||| || || ||||| | ||| ||| | |||||| ||| || |||| ||| | ||
Sbjct 3252255 TGTCTCAAAGATTTGGACATTCAATTTACGAGCTTCTGGGCTGTCAAATGGATATCTCAT 3252314
Query 37503 TAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562
||| | ||| | || || || || ||||| || | || || |||| || || || ||
Sbjct 3252315 TAAAAGAAATGCGTCTGCTAAGCCTTGAACTCCTAAGCCAATAGGTCGATTCTTTTTGTT 3252374
Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTT 37622
|| ||| | ||| | | |||||| | ||||| || || ||||| |||| ||||
Sbjct 3252375 TGAATAAGAGGCTTCCTTTAGAGGATAAAAGTTGATCTCAATAATTTTGTTTAAATTTCG 3252434
Query 37623 AACTAGTATTTTCGTAA-TTATTCTCAACTTGTCGAA-CATAAATACGTT-ATTATTAAC 37679
| ||| |||| || || |||| || || | | ||| | ||||
Sbjct 3252435 TGTGACCGCTTTGGTAACTTCTTTGAGTCTTGCAAAATCAAATTTTTGTTCCTCGGTAAC 3252494
Query 37680 AAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAA 37739
|||||| |||| | ||||| | |||||||| |||||||||||||| | |||| |
Sbjct 3252495 AAATTTTTTCAAGGCTATAGAGGCAAGATTACAAACAGCAACTTCATCAGGGGCACTATA 3252554
Query 37740 TTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGA 37799
|| | ||| || || || ||||| | | || ||||| | ||| | ||||||||
Sbjct 3252555 TTCAACAATTTCAGTGCACAGATTTGAACACTTGATGGTTCCAAGATTTTTCTGATTGGA 3252614
Query 37800 TTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTC 37859
|||| ||||||| ||||||||| || |||||||| || ||| || || || ||
Sbjct 3252615 CTTTTCATTACAATGATCTTTATAAAGCATATACGGAACACCAGTTTCCATCTGGGCATC 3252674
Query 37860 GATAATAGATTTCCATAAACTTCTTGCTTTAA--CGATCGCTTTAAtttttttCTTTGTT 37917
|| || | || ||| | | || ||||| | | | | || ||||||||| |
Sbjct 3252675 AATGATTGCTTGCCAAAGAGCTCGAGCTTTTATTTGCTGATTGTATCTTTTTTCTT--CT 3252732
Query 37918 TCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACAT 37977
|| |||| | ||| | || || || |||| || | || ||| ||| || ||||||
Sbjct 3252733 TCATATTTAACATAAAGCTTATTGAATTCATCTCCATAAACTTCGAATAGACCAGGACAT 3252792
Query 37978 TCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCA 38037
| | ||||||||| ||| ||| ||||||||||| || || |||||||| | || |
Sbjct 3252793 TTGTGTGGACACATAAGACTCCACATTTCATCTTTTTTAACTCGCTCCATAAAAAGATTA 3252852
Query 38038 GGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTT 38097
|| ||||| | || ||| |||||| | ||| ||||| || || || |||
Sbjct 3252853 GGCACCCAAAGAGCTAAAAACAAATCTCGAGCTCTCATCTCTTCTTTACCAGTGTTTTTT 3252912
Query 38098 CTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT-TGC 38156
||||||| ||| ||||| || | |||||| ||||| || || |||||||| | ||| ||
Sbjct 3252913 CTTAAGCATAGGAAATCAAAGACATCAGCATGCCAAGGCTCAATATAAATAG-CATAAGC 3252971
Query 38157 TCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAA 38216
|||||||| ||| ||| || || || | ||| | | | | | |||| | ||| | |
Sbjct 3252972 TCCTGGTCGTTT---ACCCCCTTGGTTGACATAACGAGCAGATTCATTAAACATTTTCAG 3253028
Query 38217 CATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCG 38276
|||||| || | ||||| ||| || ||| | || || || || || |||||
Sbjct 3253029 CATAGGCACGAGACCATCAGAGAAACCATTTGTCCCTCTGATTCGGGTTCCTTTCGCTCG 3253088
Query 38277 --TATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGT 38334
|| | | || || | || |||||||| |||| ||| || || ||| || | |
Sbjct 3253089 AATACAATGAACATTGAGA--CCAATTCCACCAGCATATTTAGAAATCAAATTACAATCT 3253146
Query 38335 TTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394
|| || ||||| |||| ||||| ||||| || ||| | |||| || | ||||||||||
Sbjct 3253147 TTCAAAGTATCGGATATTCCTTCAATACTATCTTCCCTCATTGATAAAAGAAAACAACTA 3253206
Query 38395 GACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCAT 38454
|| | ||||| || || || || ||||| | |||||||| |||||| | ||||||
Sbjct 3253207 GATAGCTGAGGTCGAGGTGTACCAGCATTAAAAAGGGTAGGAGAAGCATGTGTAAACCAT 3253266
Query 38455 TTTTCCGACAAATAATT-ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACC 38513
|||| ||| | ||||| || || | || | || |||||| || ||||| ||
Sbjct 3253267 TTTTGAGAC-ATTAATTCGTAGGTCTGTAAGGCTGATTCAATATCAGATCCATGAATTCC 3253325
Query 38514 TAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAG 38573
| || || ||||||||||||||||| || ||||| | || |||| ||| ||||||
Sbjct 3253326 AACAGCAACTCTCATTAGCATATGTTGCGGCCTTTCAACTACTTTACCATTGATTTTAAG 3253385
Query 38574 TAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610
|| || ||| |||| || ||||| | |||||||||
Sbjct 3253386 AAGGTATGATCTTTCCAAGGTTTTGAAACCAAAATAA 3253422
>seq468
Length=1118636
Score = 226 bits (250), Expect = 3e-54
Identities = 420/607 (69%), Gaps = 17/607 (3%)
Strand=Plus/Plus
Query 11614 ATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTC 11673
|| |||||| | ||||| ||||||||||||||||| ||||| |||| | || |||||
Sbjct 1106263 ATATTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTC 1106322
Query 11674 ATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAA 11733
||||| || ||||| || ||||||| || || ||||| | |||||| ||||| || ||
Sbjct 1106323 GTTAGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAA 1106382
Query 11734 TGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-A 11792
|| || || || || || || || ||| |||||| || | | |||||| || | |
Sbjct 1106383 AGAGCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGA 1106442
Query 11793 CCTTGTTGC--TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCAT 11850
|| || | | |||| ||| | ||||| ||||| || | || ||| |
Sbjct 1106443 GACTGATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGAC 1106502
Query 11851 TGTTTCTATAGCGTT--AAATAAA-TGCATTTTTTCTATATTATCTCTTACATATGTATC 11907
||||| ||||| || ||| ||| | | | || | ||| || | || || ||
Sbjct 1106503 AGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGTC---AGGATCACTGATGTAAGTGTC 1106559
Query 11908 TATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA 11967
||| | || || ||||| || || || | ||| || || || |||||||| ||||| ||
Sbjct 1106560 TATCAGTAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAA 1106619
Query 11968 ACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTAC 12027
|||||| || || | | ||| | ||| | ||||||||| |||||||| ||||||||
Sbjct 1106620 ACATCGAGCTTCGGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTAC 1106679
Query 12028 AATACCATCACTAGATGCA---AAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084
|||||| || || ||| || ||||| | | || | ||||| | ||| ||
Sbjct 1106680 AATACCGTC---TGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTC 1106736
Query 12085 TTTAGTTAA-TTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCC 12143
| ||||| ||| |||| ||| ||||||| ||||| || || |||||||| ||||
Sbjct 1106737 -ATCGTTAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCC 1106795
Query 12144 AAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAA 12203
| || || | | || |||||||||| ||| |||||| |||||| ||||||||| |
Sbjct 1106796 AGAACGAGGCTTCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACA 1106855
Query 12204 TAACGAA 12210
||| ||
Sbjct 1106856 CAACAAA 1106862
>seq453
Length=2394413
Score = 226 bits (250), Expect = 3e-54
Identities = 420/607 (69%), Gaps = 17/607 (3%)
Strand=Plus/Plus
Query 11614 ATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTC 11673
|| |||||| | ||||| ||||||||||||||||| ||||| |||| | || |||||
Sbjct 11715 ATATTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTC 11774
Query 11674 ATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAA 11733
||||| || ||||| || ||||||| || || ||||| | |||||| ||||| || ||
Sbjct 11775 GTTAGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAA 11834
Query 11734 TGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-A 11792
|| || || || || || || || ||| |||||| || | | |||||| || | |
Sbjct 11835 AGAGCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGA 11894
Query 11793 CCTTGTTGC--TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCAT 11850
|| || | | |||| ||| | ||||| ||||| || | || ||| |
Sbjct 11895 GACTGATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGAC 11954
Query 11851 TGTTTCTATAGCGTT--AAATAAA-TGCATTTTTTCTATATTATCTCTTACATATGTATC 11907
||||| ||||| || ||| ||| | | | || | ||| || | || || ||
Sbjct 11955 AGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGTC---AGGATCACTGATGTAAGTGTC 12011
Query 11908 TATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA 11967
||| | || || ||||| || || || | ||| || || || |||||||| ||||| ||
Sbjct 12012 TATCAGTAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAA 12071
Query 11968 ACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTAC 12027
|||||| || || | | ||| | ||| | ||||||||| |||||||| ||||||||
Sbjct 12072 ACATCGAGCTTCGGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTAC 12131
Query 12028 AATACCATCACTAGATGCA---AAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084
|||||| || || ||| || ||||| | | || | ||||| | ||| ||
Sbjct 12132 AATACCGTC---TGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTC 12188
Query 12085 TTTAGTTAA-TTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCC 12143
| ||||| ||| |||| ||| ||||||| ||||| || || |||||||| ||||
Sbjct 12189 -ATCGTTAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCC 12247
Query 12144 AAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAA 12203
| || || | | || |||||||||| ||| |||||| |||||| ||||||||| |
Sbjct 12248 AGAACGAGGCTTCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACA 12307
Query 12204 TAACGAA 12210
||| ||
Sbjct 12308 CAACAAA 12314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468521045945040
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