Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq442 616 2e-171 seq468 251 9e-62 seq453 251 9e-62 >seq442 Length=7801961 Score = 616 bits (682), Expect = 2e-171 Identities = 1236/1813 (68%), Gaps = 37/1813 (2%) Strand=Plus/Plus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || ||||| | |||| |||||||| || || || || || || ||| || || ||| Sbjct 3251626 GCAGGTTTACTTCGTAAGTAGTACATGCCTGTCTTAAGCCCAAGCTCCCAGCCATAGAAA 3251685 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 ||||| || | ||| | | | || | | | ||| ||||| | |||||||||| Sbjct 3251686 TGCATCGAGGTCATTTTAGCAACAGAAGGTCTTTCAAAATGAATATTTAAAGATTGACTT 3251745 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| || || ||||| | || |||||||||| | || | ||||| ||||||||| Sbjct 3251746 TGATCAATAAAAGCTCCACGTTCAGCAGCCATTTCCAGAATATTTTTTTGAGGAATTTCC 3251805 Query 65040 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGAT 65096 |||| |||| ||| | | |||||||||| ||||| | | | | |||||||| Sbjct 3251806 CAAACAGTTCGATACAATTGCTTAATATCCTCTGGGATACCTTCAATAGCTTGAATGGAG 3251865 Query 65097 CCACCATCTGCCATAATCCTATTCT-TGATCTCATCATTCCATAATTTTCTCTCGGTTAA 65155 || | | |||||| | |||| | || || |||||||| | || || || || || Sbjct 3251866 CCTCTGTGATAAATAATC-TGTTCTCTCATGTCTTCATTCCAAAGTTCTCGATCAGTCAA 3251924 Query 65156 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 65215 | || | | ||||| | ||||||||||||||||| ||||| | |||| ||||| || Sbjct 3251925 ATCTTTGACAAGATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATA 3251984 Query 65216 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 65275 || ||||| ||||| ||||| | ||| || || || |||||||| |||||||||||||| Sbjct 3251985 GATGTTACTTGTATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGC 3252044 Query 65276 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 65333 || ||||| || || | || | ||| |||| |||||| ||||| | |||||| Sbjct 3252045 TGTAGGCATGGGCGCTAATAACAGACTGTTTCGAAGACC--ATGTTTAGCAATTTTACTC 3252102 Query 65334 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 65393 || || | ||| | ||| |||| || ||| || ||| | | Sbjct 3252103 TTCAGCTCTGTCCAGTCCCACAGATTAGATGGTGTTACACCCCACATATCATATTGCAAA 3252162 Query 65394 ATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGT 65453 || || ||| ||| |||||| |||| || ||||| ||||| | ||||| || Sbjct 3252163 ATCCCTTTAGAAGCGGGAGATCCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGC 3252222 Query 65454 TCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCT 65513 |||||||| || || | || || ||||| || || || ||||| | ||| | | Sbjct 3252223 TCACAACTTGCTTCGAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTA 3252282 Query 65514 TGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 65573 | ||||| |||| ||||||||||| | | | || ||| ||||||||||| |||||| Sbjct 3252283 CGAGCTTCTGGGCTGTCAAATGGATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGA 3252342 Query 65574 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAG-CTTCTGGAATAGGATA 65632 || || | || ||||||| || | || || || || || |||| | |||||| Sbjct 3252343 ACTCCTAAGCCAATAGGTCGATTCTTTTTGTTTGA-ATAAGAGGCTTCCTTTAGAGGATA 3252401 Query 65633 ATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTT 65689 | | || || || |||||||| || | ||||| |||| ||||| || || || Sbjct 3252402 AAAGTTGATCTCAATAATTTTGTTTAAATTTCGTGTGACCG---CTTTGGTAACTTCTTT 3252458 Query 65690 CAGTTTGAGAAAATCAAATC---GCTCATCTATTACAAACATGTTCAATGCAACAGATGC 65746 ||| | |||||||||| | || || | ||||| | ||||| || | ||| || Sbjct 3252459 GAGTCTTGCAAAATCAAATTTTTGTTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGC 3252518 Query 65747 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 65806 ||||||||||| || || |||| || | ||||| | || |||||||| ||||| Sbjct 3252519 AAGATTACAAACAGCAACTTCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATT 3252578 Query 65807 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 65866 ||||||||||||||| | ||||| ||||| ||||| ||||| ||| ||||| Sbjct 3252579 TGAACACTTGATGGTTCCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATA 3252638 Query 65867 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 65926 ||| || | ||| ||||||||| ||||| | || || || |||| ||| | |||| Sbjct 3252639 AAGCATATACGGAACACCAGTTTCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCG 3252698 Query 65927 AGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGT-TCGA 65985 ||| |||||| |||||||| |||||| ||| ||| ||| || | | | || Sbjct 3252699 AGCTTTTATTTGCTGATTGTATCTTTTTTCTTCTTCATATTTAACATA-AAGCTTATTGA 3252757 Query 65986 ACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACT 66045 | || ||||| |||| | | | |||||||||| | |||||||| | |||| Sbjct 3252758 ATTCATCTCCATAAACTTCGAATAGACCAGGACATTTGTGTGGACACATAAGACTCCACA 3252817 Query 66046 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAAT 66105 | | || | || ||||| | |||||| |||| ||| | ||||||||||| ||| |||| Sbjct 3252818 TTTCATCTTTTTTAACTCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAAT 3252877 Query 66106 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAG-ATCGAGGAACGCCATAAT 66163 ||| | ||| || || || || || || ||| ||||| || ||||| | | | Sbjct 3252878 CTCGAGCTCTCATCTCTTCTTTACCAGTGTTTTTTCTTAAGCAT--AGGAAATCAAAGAC 3252935 Query 66164 ATCATAATGCCACGGTTCCAAGTATATGGCCATAA-CTCCAGGCCGTTTGTTTCCTCCCT 66222 |||| |||||| || || | || || || |||| |||| || ||||| || || | Sbjct 3252936 ATCAGCATGCCAAGGCTCAATATAAATAGC-ATAAGCTCCTGGTCGTTTA---CCCCCTT 3252991 Query 66223 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 66282 | | | || | ||| | | |||| | | | ||| ||| || | | ||||| || Sbjct 3252992 GGTTGACATAACGAGCAGATTCATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGA 3253051 Query 66283 TACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAA--TTGATAGACC 66340 |||||| ||||| ||| | |||| | || |||||| | || |||| |||| Sbjct 3253052 AACCATTTGTCCCTCTGATTCGGGTTCCTTTCGCTCGAATACAATGAACATTGA--GACC 3253109 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 ||||| || || |||||| || || || ||| || ||||| | || || || Sbjct 3253110 AATTCCACCAGCATATTTAGAAATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTC 3253169 Query 66401 TATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 66459 |||||||| ||| |||| | ||| |||||||| ||||| | || | ||| || | Sbjct 3253170 AATACTATCTTCCCTCATTGATAAA-AGAAAACAACTAGATAGCTGAGGTCGAGGTGTAC 3253228 Query 66460 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 66519 | |||||||| | |||||||||||| || ||||||||||||| ||| | || | ||| | Sbjct 3253229 CAGCATTAAAAAGGGTAGGAGAAGCATGTGTAAACCATTTTTGAGACATTAATTCGTAGG 3253288 Query 66520 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 66579 ||| | ||||| || ||||| || ||||||||| || || || | ||||| ||| | Sbjct 3253289 TCTGTAAGGCTGATTCAATATCAGATCCATGAATTCCAACAGCAACTCTCATTAGCATAT 3253348 Query 66580 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 66639 | || || |||||||| | || || ||||| | | ||| ||| ||||||| |||| Sbjct 3253349 GTTGCGGCCTTTCAACTACTTTACCATTGATTTTAAGAAGGTATGATCTTTCCAAGGTTT 3253408 Query 66640 TAAAACCAAAATA 66652 | ||||||||||| Sbjct 3253409 TGAAACCAAAATA 3253421 >seq468 Length=1118636 Score = 251 bits (278), Expect = 9e-62 Identities = 540/803 (67%), Gaps = 13/803 (2%) Strand=Plus/Plus Query 35975 AATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTC 36034 |||||| | |||||| ||||| ||||| || || ||| |||||||| ||| Sbjct 1106096 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 1106155 Query 36035 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 36094 |||||||| || |||||| | ||| | || | ||||| || || || || || Sbjct 1106156 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 1106215 Query 36095 TCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATC 36154 ||| | || | | ||| |||||||||| | | | || |||||| | | Sbjct 1106216 TCTCGCACTATTTCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAAC 1106275 Query 36155 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 36214 ||||| || ||||| || |||| || || |||| | || | |||||| || || || Sbjct 1106276 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 1106335 Query 36215 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 36274 | || ||||| ||||||||||||||||||||||| || | || || || || || || Sbjct 1106336 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 1106395 Query 36275 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT 36334 || || ||||| || ||||||||||| | ||| || || || | |||| ||| Sbjct 1106396 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAG--ACTG--ATGG 1106451 Query 36335 AT-------CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 36387 || ||| ||| ||||| || ||||| | ||||| || | || || || Sbjct 1106452 ATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAAT 1106511 Query 36388 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 36447 ||| || || ||| | | | | | ||| | | || || || |||| || || Sbjct 1106512 AGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCT 1106571 Query 36448 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 ||||| || || || | || ||||| || |||||||| || || ||||||| ||| || Sbjct 1106572 GTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTC 1106631 Query 36508 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567 ||||||||| | || | ||||| ||| |||||||||||||| || || ||||| Sbjct 1106632 GGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGA 1106691 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTAGTTTAT 36626 ||| | || || ||||| |||| | ||||||| ||| | | || | || ||| Sbjct 1106692 GGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT-TAAGCTTAG 1106750 Query 36627 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 36686 ||| ||| | | |||| ||||| || || ||||| || ||||| || || || || | Sbjct 1106751 CCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAG 1106810 Query 36687 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTT 36746 | || |||||||| | ||| || ||| |||| | ||| || || | |||||| | ||| Sbjct 1106811 CTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAG 1106870 Query 36747 GATTTTTTGCAAGGATTGGTTCC 36769 |||| | | ||| | ||||||| Sbjct 1106871 GATTCTCTCGAAGTAATGGTTCC 1106893 >seq453 Length=2394413 Score = 251 bits (278), Expect = 9e-62 Identities = 540/803 (67%), Gaps = 13/803 (2%) Strand=Plus/Plus Query 35975 AATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTC 36034 |||||| | |||||| ||||| ||||| || || ||| |||||||| ||| Sbjct 11548 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 11607 Query 36035 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 36094 |||||||| || |||||| | ||| | || | ||||| || || || || || Sbjct 11608 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 11667 Query 36095 TCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATC 36154 ||| | || | | ||| |||||||||| | | | || |||||| | | Sbjct 11668 TCTCGCACTATTTCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAAC 11727 Query 36155 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 36214 ||||| || ||||| || |||| || || |||| | || | |||||| || || || Sbjct 11728 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 11787 Query 36215 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 36274 | || ||||| ||||||||||||||||||||||| || | || || || || || || Sbjct 11788 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 11847 Query 36275 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT 36334 || || ||||| || ||||||||||| | ||| || || || | |||| ||| Sbjct 11848 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAG--ACTG--ATGG 11903 Query 36335 AT-------CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 36387 || ||| ||| ||||| || ||||| | ||||| || | || || || Sbjct 11904 ATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAAT 11963 Query 36388 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 36447 ||| || || ||| | | | | | ||| | | || || || |||| || || Sbjct 11964 AGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCT 12023 Query 36448 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 ||||| || || || | || ||||| || |||||||| || || ||||||| ||| || Sbjct 12024 GTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTC 12083 Query 36508 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567 ||||||||| | || | ||||| ||| |||||||||||||| || || ||||| Sbjct 12084 GGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGA 12143 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTAGTTTAT 36626 ||| | || || ||||| |||| | ||||||| ||| | | || | || ||| Sbjct 12144 GGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT-TAAGCTTAG 12202 Query 36627 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 36686 ||| ||| | | |||| ||||| || || ||||| || ||||| || || || || | Sbjct 12203 CCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAG 12262 Query 36687 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTT 36746 | || |||||||| | ||| || ||| |||| | ||| || || | |||||| | ||| Sbjct 12263 CTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAG 12322 Query 36747 GATTTTTTGCAAGGATTGGTTCC 36769 |||| | | ||| | ||||||| Sbjct 12323 GATTCTCTCGAAGTAATGGTTCC 12345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658167526390440