Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq444 140 3e-28
seq468 98.7 1e-15
seq453 98.7 1e-15
>seq444
Length=5217058
Score = 140 bits (154), Expect = 3e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
||||| || ||||||| ||||| ||||||||||| |||||||| || | || | |
Sbjct 3541813 CGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCG 3541872
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| ||||||||||||||||| |||||| |||||| || || || || || |||||||||
Sbjct 3541873 TCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTG 3541932
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| |||||| ||| | | ||| | || || | || || ||||||| || |
Sbjct 3541933 TCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATG 3541992
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| || || | ||||||||||| ||||||||
Sbjct 3541993 GTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027
Score = 140 bits (154), Expect = 3e-28
Identities = 162/216 (75%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGA 139608
|| || || ||||||| |||||||||||||||||||| |||||||||| || | || |
Sbjct 3542389 CGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGTCCA 3542448
Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668
||||| |||||||||||||| |||||| ||| || |||||||| || || ||||| ||
Sbjct 3542449 -TCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCCTT 3542507
Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
||| ||| || ||| | | ||| | ||||| | || || ||||||| ||| |
Sbjct 3542508 GTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTGAT 3542567
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| || || || | || || ||||| ||||||||
Sbjct 3542568 GGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|| || ||||| || | || || ||||| |||||||| || || | || ||||
Sbjct 3541585 CGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGT--TCGAC 3541642
Query 139610 --TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 139667
|| || |||||||||||||| |||| ||||| || ||||| || || || ||||| |
Sbjct 3541643 CATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCT 3541702
Query 139668 TGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727
|||| |||||| || | | ||| | ||||||| || || || || | ||| |
Sbjct 3541703 TGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGA 3541762
Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| || || || | ||||| ||||| |||||||||
Sbjct 3541763 TGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCATA 3541800
>seq468
Length=1118636
Score = 98.7 bits (108), Expect = 1e-15
Identities = 279/422 (66%), Gaps = 9/422 (2%)
Strand=Plus/Minus
Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGT-GCGCAAAAAGGATGATTGGGCATTGAAATGG 52590
|||| ||| |||| | ||| || ||||| || ||||| || ||| |||||| | || |||
Sbjct 1106519 TCAAAGCTATTGAAACTGTCCCATGTGTTGCTCAAAA-GGCTGAATGGGCAATAAACTGG 1106461
Query 52591 ATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGT 52650
| | ||| || | ||||||||||| | || | || ||||| || ||||||
Sbjct 1106460 ACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGT 1106401
Query 52651 GTGtttttttCGGGTAGTTTTGCGGCAATATTTT-ACATCAAAACCTTGGGCATAATGCC 52709
| ||||| || || ||| || || || |||| | | |||| | | ||| | |||||
Sbjct 1106400 ATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGCGT-GGCCTGATGCC 1106342
Query 52710 CGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGC 52769
|| | || || ||||| | || || || || |||||| | || ||||||||
Sbjct 1106341 AGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGATTACATTGTGATTTTGC 1106282
Query 52770 GTGTTTG-TATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACA 52828
|||||| |||| |||| | | ||||| | || | ||| |||| ||| |
Sbjct 1106281 CTGTTTGTTATTTAAATATGTTGTTAAAAGACCGAGTG----AAAAAATTATTCAAGAAA 1106226
Query 52829 TGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCAT 52888
| | ||| || || || || || | | ||||| || || || || || || ||
Sbjct 1106225 TAGTGCGAGATGCTGTGGAAATCGAGCAGAAATTTTTAACCGAGGCATTGCCAGTTTCTC 1106166
Query 52889 TGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGT 52948
| | || |||||| | |||||| | | ||||| ||||||||||| |||||| ||
Sbjct 1106165 TCATAGGAATGAACAACAAAATGATGGCCCAATACATTGAGTTTGTTGCAGACAGATTGC 1106106
Query 52949 TG 52950
||
Sbjct 1106105 TG 1106104
>seq453
Length=2394413
Score = 98.7 bits (108), Expect = 1e-15
Identities = 279/422 (66%), Gaps = 9/422 (2%)
Strand=Plus/Minus
Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGT-GCGCAAAAAGGATGATTGGGCATTGAAATGG 52590
|||| ||| |||| | ||| || ||||| || ||||| || ||| |||||| | || |||
Sbjct 11971 TCAAAGCTATTGAAACTGTCCCATGTGTTGCTCAAAA-GGCTGAATGGGCAATAAACTGG 11913
Query 52591 ATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGT 52650
| | ||| || | ||||||||||| | || | || ||||| || ||||||
Sbjct 11912 ACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGT 11853
Query 52651 GTGtttttttCGGGTAGTTTTGCGGCAATATTTT-ACATCAAAACCTTGGGCATAATGCC 52709
| ||||| || || ||| || || || |||| | | |||| | | ||| | |||||
Sbjct 11852 ATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGCGT-GGCCTGATGCC 11794
Query 52710 CGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGC 52769
|| | || || ||||| | || || || || |||||| | || ||||||||
Sbjct 11793 AGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGATTACATTGTGATTTTGC 11734
Query 52770 GTGTTTG-TATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACA 52828
|||||| |||| |||| | | ||||| | || | ||| |||| ||| |
Sbjct 11733 CTGTTTGTTATTTAAATATGTTGTTAAAAGACCGAGTG----AAAAAATTATTCAAGAAA 11678
Query 52829 TGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCAT 52888
| | ||| || || || || || | | ||||| || || || || || || ||
Sbjct 11677 TAGTGCGAGATGCTGTGGAAATCGAGCAGAAATTTTTAACCGAGGCATTGCCAGTTTCTC 11618
Query 52889 TGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGT 52948
| | || |||||| | |||||| | | ||||| ||||||||||| |||||| ||
Sbjct 11617 TCATAGGAATGAACAACAAAATGATGGCCCAATACATTGAGTTTGTTGCAGACAGATTGC 11558
Query 52949 TG 52950
||
Sbjct 11557 TG 11556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496060025287200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |