Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq444 140 3e-28 seq468 98.7 1e-15 seq453 98.7 1e-15 >seq444 Length=5217058 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || ||||||| ||||| ||||||||||| |||||||| || | || | | Sbjct 3541813 CGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCG 3541872 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || ||||||||||||||||| |||||| |||||| || || || || || ||||||||| Sbjct 3541873 TCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTG 3541932 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| ||| | | ||| | || || | || || ||||||| || | Sbjct 3541933 TCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATG 3541992 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | ||||||||||| |||||||| Sbjct 3541993 GTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGA 139608 || || || ||||||| |||||||||||||||||||| |||||||||| || | || | Sbjct 3542389 CGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGTCCA 3542448 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| |||||||||||||| |||||| ||| || |||||||| || || ||||| || Sbjct 3542449 -TCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCCTT 3542507 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || ||| | | ||| | ||||| | || || ||||||| ||| | Sbjct 3542508 GTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTGAT 3542567 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | || || ||||| |||||||| Sbjct 3542568 GGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 || || ||||| || | || || ||||| |||||||| || || | || |||| Sbjct 3541585 CGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGT--TCGAC 3541642 Query 139610 --TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 139667 || || |||||||||||||| |||| ||||| || ||||| || || || ||||| | Sbjct 3541643 CATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCT 3541702 Query 139668 TGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 |||| |||||| || | | ||| | ||||||| || || || || | ||| | Sbjct 3541703 TGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGA 3541762 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || || || | ||||| ||||| ||||||||| Sbjct 3541763 TGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCATA 3541800 >seq468 Length=1118636 Score = 98.7 bits (108), Expect = 1e-15 Identities = 279/422 (66%), Gaps = 9/422 (2%) Strand=Plus/Minus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGT-GCGCAAAAAGGATGATTGGGCATTGAAATGG 52590 |||| ||| |||| | ||| || ||||| || ||||| || ||| |||||| | || ||| Sbjct 1106519 TCAAAGCTATTGAAACTGTCCCATGTGTTGCTCAAAA-GGCTGAATGGGCAATAAACTGG 1106461 Query 52591 ATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGT 52650 | | ||| || | ||||||||||| | || | || ||||| || |||||| Sbjct 1106460 ACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGT 1106401 Query 52651 GTGtttttttCGGGTAGTTTTGCGGCAATATTTT-ACATCAAAACCTTGGGCATAATGCC 52709 | ||||| || || ||| || || || |||| | | |||| | | ||| | ||||| Sbjct 1106400 ATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGCGT-GGCCTGATGCC 1106342 Query 52710 CGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGC 52769 || | || || ||||| | || || || || |||||| | || |||||||| Sbjct 1106341 AGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGATTACATTGTGATTTTGC 1106282 Query 52770 GTGTTTG-TATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACA 52828 |||||| |||| |||| | | ||||| | || | ||| |||| ||| | Sbjct 1106281 CTGTTTGTTATTTAAATATGTTGTTAAAAGACCGAGTG----AAAAAATTATTCAAGAAA 1106226 Query 52829 TGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCAT 52888 | | ||| || || || || || | | ||||| || || || || || || || Sbjct 1106225 TAGTGCGAGATGCTGTGGAAATCGAGCAGAAATTTTTAACCGAGGCATTGCCAGTTTCTC 1106166 Query 52889 TGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGT 52948 | | || |||||| | |||||| | | ||||| ||||||||||| |||||| || Sbjct 1106165 TCATAGGAATGAACAACAAAATGATGGCCCAATACATTGAGTTTGTTGCAGACAGATTGC 1106106 Query 52949 TG 52950 || Sbjct 1106105 TG 1106104 >seq453 Length=2394413 Score = 98.7 bits (108), Expect = 1e-15 Identities = 279/422 (66%), Gaps = 9/422 (2%) Strand=Plus/Minus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGT-GCGCAAAAAGGATGATTGGGCATTGAAATGG 52590 |||| ||| |||| | ||| || ||||| || ||||| || ||| |||||| | || ||| Sbjct 11971 TCAAAGCTATTGAAACTGTCCCATGTGTTGCTCAAAA-GGCTGAATGGGCAATAAACTGG 11913 Query 52591 ATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGT 52650 | | ||| || | ||||||||||| | || | || ||||| || |||||| Sbjct 11912 ACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGT 11853 Query 52651 GTGtttttttCGGGTAGTTTTGCGGCAATATTTT-ACATCAAAACCTTGGGCATAATGCC 52709 | ||||| || || ||| || || || |||| | | |||| | | ||| | ||||| Sbjct 11852 ATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGCGT-GGCCTGATGCC 11794 Query 52710 CGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGC 52769 || | || || ||||| | || || || || |||||| | || |||||||| Sbjct 11793 AGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGATTACATTGTGATTTTGC 11734 Query 52770 GTGTTTG-TATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACA 52828 |||||| |||| |||| | | ||||| | || | ||| |||| ||| | Sbjct 11733 CTGTTTGTTATTTAAATATGTTGTTAAAAGACCGAGTG----AAAAAATTATTCAAGAAA 11678 Query 52829 TGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCAT 52888 | | ||| || || || || || | | ||||| || || || || || || || Sbjct 11677 TAGTGCGAGATGCTGTGGAAATCGAGCAGAAATTTTTAACCGAGGCATTGCCAGTTTCTC 11618 Query 52889 TGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGT 52948 | | || |||||| | |||||| | | ||||| ||||||||||| |||||| || Sbjct 11617 TCATAGGAATGAACAACAAAATGATGGCCCAATACATTGAGTTTGTTGCAGACAGATTGC 11558 Query 52949 TG 52950 || Sbjct 11557 TG 11556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060025287200