Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq442 706 0.0
seq468 262 6e-65
seq453 262 6e-65
>seq442
Length=7801961
Score = 706 bits (782), Expect = 0.0
Identities = 1280/1851 (69%), Gaps = 35/1851 (2%)
Strand=Plus/Plus
Query 78700 ATCTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 78759
||||| | ||| || | || ||||| || | | | || ||||| | |||| |||
Sbjct 3251587 ATCTTCTTCTTATCAACAGTAAATTGGATAGCATTTGCAGCAGGTTTACTTCGTAAGTAG 3251646
Query 78760 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAA 78819
||||| || || || || || || ||| || ||||||||||| || | ||| | |
Sbjct 3251647 TACATGCCTGTCTTAAGCCCAAGCTCCCAGCCATAGAAATGCATCGAGGTCATTTTAGCA 3251706
Query 78820 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 78879
| || | | | ||| ||||| | ||||||||||||||| || || ||||| |
Sbjct 3251707 ACAGAAGGTCTTTCAAAATGAATATTTAAAGATTGACTTTGATCAATAAAAGCTCCACGT 3251766
Query 78880 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGC 78939
|| |||||||||| | || | ||||| ||||||||||||| |||| ||| | | ||
Sbjct 3251767 TCAGCAGCCATTTCCAGAATATTTTTTTGAGGAATTTCCCAAACAGTTCGATACAATTGC 3251826
Query 78940 TTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCTGCCATAATCCTA 78996
|||||||| ||||| | | | | |||||||| || | | |||||| |
Sbjct 3251827 TTAATATCCTCTGGGATACCTTCAATAGCTTGAATGGAGCCTCTGTGATAAATAATC-TG 3251885
Query 78997 TTCT-TGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 79055
|||| | || ||||||||||| | || || || || ||| || | | ||||| | ||
Sbjct 3251886 TTCTCTCATGTCTTCATTCCAAAGTTCTCGATCAGTCAAATCTTTGACAAGATGGTGGTT 3251945
Query 79056 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTC 79115
||||||||||||||| ||||| | |||| ||||| || || ||||| |||||||||||
Sbjct 3251946 AACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATAGATGTTACTTGTATATGGTTC 3252005
Query 79116 CACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAA 79175
| ||||| || || |||||||| |||||||||||||| || ||||| || || | ||
Sbjct 3252006 AATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGGCATGGGCGCTAATAA 3252065
Query 79176 TAAACTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAA 79233
| ||| |||| |||||| ||| | | |||||| || || | ||| |||||
Sbjct 3252066 CAGACTGTTTCGAAGACC--ATGTTTAGCAATTTTACTCTTCAGCTCTGTCCAGTCCCAC 3252123
Query 79234 AGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGAT 79293
|||| ||| || ||| ||| | ||||||||| | ||| || ||| |||| |||
Sbjct 3252124 AGATTAGATGGTGTTACACCCCACATATCATATTGCAAAATCCCTTTAGAAGCGGGAGAT 3252183
Query 79294 CCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCT 79353
|||| || ||||| |||||||| | ||| || | |||||||| || || | |||
Sbjct 3252184 CCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGCTCACAACTTGCTTCGAGAGCT 3252243
Query 79354 CCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAAT 79413
|| ||||| || || || || || | ||| | | | |||||| |||| ||||||
Sbjct 3252244 CCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTACGAGCTTCTGGGCTGTCAAAT 3252303
Query 79414 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 79473
||||| | | | || ||| ||||||||||| |||||||| || | || ||||||| |
Sbjct 3252304 GGATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGAACTCCTAAGCCAATAGGTCGA 3252363
Query 79474 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 79533
| | || || ||| ||||| | ||||||| | || || || ||||||||
Sbjct 3252364 TTCTTTTTGTTTGAATAAGAGGCTTCCTTTAGAGGATAAAAGTTGATCTCAATAATTTTG 3252423
Query 79534 TTGAGATTCC---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC-- 79588
|| | ||| | |||| ||||| || || || ||| | ||||||||||
Sbjct 3252424 TTTAAATTTCGTGTGACCG---CTTTGGTAACTTCTTTGAGTCTTGCAAAATCAAATTTT 3252480
Query 79589 -GTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCA 79647
|| | || | ||||| | ||||| || | ||| || ||||||||||| || || |||
Sbjct 3252481 TGTTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGCAAGATTACAAACAGCAACTTCA 3252540
Query 79648 TTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAA 79707
| || | ||||| | ||||||||||| || || |||||| |||||||| | |
Sbjct 3252541 TCAGGGGCACTATATTCAACAATTTCAGTGCACAGATTTGAACACTTGATGGTTCCAAGA 3252600
Query 79708 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTT 79767
|||| ||||| ||||| ||||| ||| |||||||| || ||||| |||||||
Sbjct 3252601 TTTTTCTGATTGGACTTTTCATTACAATGATCTTTATAAAGCATATACGGAACACCAGTT 3252660
Query 79768 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTAT 79827
|| ||||| | || || || |||| ||| | ||||||| |||||| ||||||
Sbjct 3252661 TCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCGAGCTTTTATTTGCTGATTGTAT 3252720
Query 79828 CTCTTTTCTCTTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAAACATCGTC 79886
|| |||||| ||| |||| ||| || | | | ||| || ||||| |||| |||
Sbjct 3252721 CTTTTTTCTTCTTCATATTTAACATA-AAGCTTATTGAATTCATCTCCATAAACTTCGAA 3252779
Query 79887 TAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTT 79946
|| |||||||||| || |||||||| | |||| | |||| | || ||||| |
Sbjct 3252780 TAGACCAGGACATTTGTGTGGACACATAAGACTCCACATTTCATCTTTTTTAACTCGCTC 3252839
Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 80006
|||||| |||| ||| | ||||||||||| ||| | ||||| | ||| ||| || ||
Sbjct 3252840 CATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAATCTCGAGCTCTCATCTCTTCTTT 3252899
Query 80007 TCCTGTATTCTTT-TTAAG-ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064
|| || || ||| ||||| || ||||| | | | ||||| |||||| || || |
Sbjct 3252900 ACCAGTGTTTTTTCTTAAGCAT--AGGAAATCAAAGACATCAGCATGCCAAGGCTCAATA 3252957
Query 80065 TATATGGCCATAA-CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 80123
|| || || |||| |||| |||||||| || || || | | || | ||| | |
Sbjct 3252958 TAAATAGC-ATAAGCTCCTGGTCGTTTA---CCCCCTTGGTTGACATAACGAGCAGATTC 3253013
Query 80124 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA 80183
|||| | | | ||| ||| || | | ||||| || |||||| ||||| |||
Sbjct 3253014 ATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGAAACCATTTGTCCCTCTGATTCG 3253073
Query 80184 GCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAG 80241
| |||| | || |||||| | || |||| |||| ||||| || || ||||||
Sbjct 3253074 GGTTCCTTTCGCTCGAATACAATGAACATTGA--GACCAATTCCACCAGCATATTTAGAA 3253131
Query 80242 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT-GTT 80300
|| || || ||| || ||||| | || || || || ||||| || |||| | |
Sbjct 3253132 ATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTCAATACTATCTTCCCTCATTGAT 3253191
Query 80301 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 80360
|| |||||||| ||||| | || | ||| || || |||||||| | |||||||||
Sbjct 3253192 AAA-AGAAAACAACTAGATAGCTGAGGTCGAGGTGTACCAGCATTAAAAAGGGTAGGAGA 3253250
Query 80361 AGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC 80420
||| || ||||||||||||| ||||| || | ||| |||| | |||||||| |||||
Sbjct 3253251 AGCATGTGTAAACCATTTTTGAGACATTAATTCGTAGGTCTGTAAGGCTGATTCAATATC 3253310
Query 80421 CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 80480
|| ||||||||| || || || | ||||| ||| || || || |||||||| | ||
Sbjct 3253311 AGATCCATGAATTCCAACAGCAACTCTCATTAGCATATGTTGCGGCCTTTCAACTACTTT 3253370
Query 80481 GTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATA 80531
||| ||||| | | ||| ||| ||||||| ||||| |||||||||||
Sbjct 3253371 ACCATTGATTTTAAGAAGGTATGATCTTTCCAAGGTTTTGAAACCAAAATA 3253421
>seq468
Length=1118636
Score = 262 bits (290), Expect = 6e-65
Identities = 530/780 (68%), Gaps = 5/780 (1%)
Strand=Plus/Plus
Query 49777 AATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTC 49836
|||||| | |||||| || || ||||| || || ||| |||||||| |||
Sbjct 1106096 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 1106155
Query 49837 ATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCA 49896
|||||||| || |||||| | ||| | || | ||||| || || || || |||
Sbjct 1106156 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 1106215
Query 49897 TCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATC 49956
||| | || | || ||| |||||||||| | | | || |||||| | |
Sbjct 1106216 TCTCGCACTATTTCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAAC 1106275
Query 49957 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 50016
||||| || ||||| || || | || || |||| | || |||||||| || || ||
Sbjct 1106276 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 1106335
Query 50017 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAG 50076
| || ||||| ||||||||||||||||||||||| || | || || || || || ||
Sbjct 1106336 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 1106395
Query 50077 AAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTCAT- 50134
||||| ||||| || |||||||||| | ||| || || || | | | || |
Sbjct 1106396 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGATTT 1106455
Query 50135 GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 50193
| | |||| ||| ||||| || ||||| | ||||| || | ||||| || ||
Sbjct 1106456 GCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCT 1106515
Query 50194 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253
|| || ||| | | | | | ||| | | ||||| || |||| || || |||
Sbjct 1106516 TTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTAC 1106575
Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313
|| || || || | || ||||| || || ||||| || || ||||||| ||| ||||||
Sbjct 1106576 ATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTA 1106635
Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373
||||| | || | ||||| |||||||||||||||||| || || ||||| |||
Sbjct 1106636 ATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCA 1106695
Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCCA 50432
| || || ||||| |||| | |||||||| ||| || ||| || ||| |||
Sbjct 1106696 GAGAAGAATGCCAACACATAGCTGATAAAATGACGTTC-TTCATCGTTAAGCTTAGCCCA 1106754
Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492
||| | | |||| ||||| || || ||||| || ||||| || || || || || ||
Sbjct 1106755 GTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTT 1106814
Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552
|||||||| | ||| || ||| |||| | || ||||| | |||||| | ||| |||||
Sbjct 1106815 CTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGATT 1106874
>seq453
Length=2394413
Score = 262 bits (290), Expect = 6e-65
Identities = 530/780 (68%), Gaps = 5/780 (1%)
Strand=Plus/Plus
Query 49777 AATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTC 49836
|||||| | |||||| || || ||||| || || ||| |||||||| |||
Sbjct 11548 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 11607
Query 49837 ATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCA 49896
|||||||| || |||||| | ||| | || | ||||| || || || || |||
Sbjct 11608 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 11667
Query 49897 TCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATC 49956
||| | || | || ||| |||||||||| | | | || |||||| | |
Sbjct 11668 TCTCGCACTATTTCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAAC 11727
Query 49957 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 50016
||||| || ||||| || || | || || |||| | || |||||||| || || ||
Sbjct 11728 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 11787
Query 50017 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAG 50076
| || ||||| ||||||||||||||||||||||| || | || || || || || ||
Sbjct 11788 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 11847
Query 50077 AAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTCAT- 50134
||||| ||||| || |||||||||| | ||| || || || | | | || |
Sbjct 11848 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGATTT 11907
Query 50135 GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 50193
| | |||| ||| ||||| || ||||| | ||||| || | ||||| || ||
Sbjct 11908 GCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCT 11967
Query 50194 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253
|| || ||| | | | | | ||| | | ||||| || |||| || || |||
Sbjct 11968 TTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTAC 12027
Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313
|| || || || | || ||||| || || ||||| || || ||||||| ||| ||||||
Sbjct 12028 ATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTA 12087
Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373
||||| | || | ||||| |||||||||||||||||| || || ||||| |||
Sbjct 12088 ATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCA 12147
Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCCA 50432
| || || ||||| |||| | |||||||| ||| || ||| || ||| |||
Sbjct 12148 GAGAAGAATGCCAACACATAGCTGATAAAATGACGTTC-TTCATCGTTAAGCTTAGCCCA 12206
Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492
||| | | |||| ||||| || || ||||| || ||||| || || || || || ||
Sbjct 12207 GTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTT 12266
Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552
|||||||| | ||| || ||| |||| | || ||||| | |||||| | ||| |||||
Sbjct 12267 CTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGATT 12326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718263044871240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |