Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq442 706 0.0 seq468 262 6e-65 seq453 262 6e-65 >seq442 Length=7801961 Score = 706 bits (782), Expect = 0.0 Identities = 1280/1851 (69%), Gaps = 35/1851 (2%) Strand=Plus/Plus Query 78700 ATCTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 78759 ||||| | ||| || | || ||||| || | | | || ||||| | |||| ||| Sbjct 3251587 ATCTTCTTCTTATCAACAGTAAATTGGATAGCATTTGCAGCAGGTTTACTTCGTAAGTAG 3251646 Query 78760 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAA 78819 ||||| || || || || || || ||| || ||||||||||| || | ||| | | Sbjct 3251647 TACATGCCTGTCTTAAGCCCAAGCTCCCAGCCATAGAAATGCATCGAGGTCATTTTAGCA 3251706 Query 78820 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 78879 | || | | | ||| ||||| | ||||||||||||||| || || ||||| | Sbjct 3251707 ACAGAAGGTCTTTCAAAATGAATATTTAAAGATTGACTTTGATCAATAAAAGCTCCACGT 3251766 Query 78880 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGC 78939 || |||||||||| | || | ||||| ||||||||||||| |||| ||| | | || Sbjct 3251767 TCAGCAGCCATTTCCAGAATATTTTTTTGAGGAATTTCCCAAACAGTTCGATACAATTGC 3251826 Query 78940 TTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCTGCCATAATCCTA 78996 |||||||| ||||| | | | | |||||||| || | | |||||| | Sbjct 3251827 TTAATATCCTCTGGGATACCTTCAATAGCTTGAATGGAGCCTCTGTGATAAATAATC-TG 3251885 Query 78997 TTCT-TGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 79055 |||| | || ||||||||||| | || || || || ||| || | | ||||| | || Sbjct 3251886 TTCTCTCATGTCTTCATTCCAAAGTTCTCGATCAGTCAAATCTTTGACAAGATGGTGGTT 3251945 Query 79056 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTC 79115 ||||||||||||||| ||||| | |||| ||||| || || ||||| ||||||||||| Sbjct 3251946 AACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATAGATGTTACTTGTATATGGTTC 3252005 Query 79116 CACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAA 79175 | ||||| || || |||||||| |||||||||||||| || ||||| || || | || Sbjct 3252006 AATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGGCATGGGCGCTAATAA 3252065 Query 79176 TAAACTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAA 79233 | ||| |||| |||||| ||| | | |||||| || || | ||| ||||| Sbjct 3252066 CAGACTGTTTCGAAGACC--ATGTTTAGCAATTTTACTCTTCAGCTCTGTCCAGTCCCAC 3252123 Query 79234 AGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGAT 79293 |||| ||| || ||| ||| | ||||||||| | ||| || ||| |||| ||| Sbjct 3252124 AGATTAGATGGTGTTACACCCCACATATCATATTGCAAAATCCCTTTAGAAGCGGGAGAT 3252183 Query 79294 CCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCT 79353 |||| || ||||| |||||||| | ||| || | |||||||| || || | ||| Sbjct 3252184 CCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGCTCACAACTTGCTTCGAGAGCT 3252243 Query 79354 CCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAAT 79413 || ||||| || || || || || | ||| | | | |||||| |||| |||||| Sbjct 3252244 CCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTACGAGCTTCTGGGCTGTCAAAT 3252303 Query 79414 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 79473 ||||| | | | || ||| ||||||||||| |||||||| || | || ||||||| | Sbjct 3252304 GGATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGAACTCCTAAGCCAATAGGTCGA 3252363 Query 79474 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 79533 | | || || ||| ||||| | ||||||| | || || || |||||||| Sbjct 3252364 TTCTTTTTGTTTGAATAAGAGGCTTCCTTTAGAGGATAAAAGTTGATCTCAATAATTTTG 3252423 Query 79534 TTGAGATTCC---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC-- 79588 || | ||| | |||| ||||| || || || ||| | |||||||||| Sbjct 3252424 TTTAAATTTCGTGTGACCG---CTTTGGTAACTTCTTTGAGTCTTGCAAAATCAAATTTT 3252480 Query 79589 -GTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCA 79647 || | || | ||||| | ||||| || | ||| || ||||||||||| || || ||| Sbjct 3252481 TGTTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGCAAGATTACAAACAGCAACTTCA 3252540 Query 79648 TTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAA 79707 | || | ||||| | ||||||||||| || || |||||| |||||||| | | Sbjct 3252541 TCAGGGGCACTATATTCAACAATTTCAGTGCACAGATTTGAACACTTGATGGTTCCAAGA 3252600 Query 79708 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTT 79767 |||| ||||| ||||| ||||| ||| |||||||| || ||||| ||||||| Sbjct 3252601 TTTTTCTGATTGGACTTTTCATTACAATGATCTTTATAAAGCATATACGGAACACCAGTT 3252660 Query 79768 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTAT 79827 || ||||| | || || || |||| ||| | ||||||| |||||| |||||| Sbjct 3252661 TCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCGAGCTTTTATTTGCTGATTGTAT 3252720 Query 79828 CTCTTTTCTCTTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAAACATCGTC 79886 || |||||| ||| |||| ||| || | | | ||| || ||||| |||| ||| Sbjct 3252721 CTTTTTTCTTCTTCATATTTAACATA-AAGCTTATTGAATTCATCTCCATAAACTTCGAA 3252779 Query 79887 TAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTT 79946 || |||||||||| || |||||||| | |||| | |||| | || ||||| | Sbjct 3252780 TAGACCAGGACATTTGTGTGGACACATAAGACTCCACATTTCATCTTTTTTAACTCGCTC 3252839 Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 80006 |||||| |||| ||| | ||||||||||| ||| | ||||| | ||| ||| || || Sbjct 3252840 CATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAATCTCGAGCTCTCATCTCTTCTTT 3252899 Query 80007 TCCTGTATTCTTT-TTAAG-ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 || || || ||| ||||| || ||||| | | | ||||| |||||| || || | Sbjct 3252900 ACCAGTGTTTTTTCTTAAGCAT--AGGAAATCAAAGACATCAGCATGCCAAGGCTCAATA 3252957 Query 80065 TATATGGCCATAA-CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 80123 || || || |||| |||| |||||||| || || || | | || | ||| | | Sbjct 3252958 TAAATAGC-ATAAGCTCCTGGTCGTTTA---CCCCCTTGGTTGACATAACGAGCAGATTC 3253013 Query 80124 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA 80183 |||| | | | ||| ||| || | | ||||| || |||||| ||||| ||| Sbjct 3253014 ATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGAAACCATTTGTCCCTCTGATTCG 3253073 Query 80184 GCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAG 80241 | |||| | || |||||| | || |||| |||| ||||| || || |||||| Sbjct 3253074 GGTTCCTTTCGCTCGAATACAATGAACATTGA--GACCAATTCCACCAGCATATTTAGAA 3253131 Query 80242 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT-GTT 80300 || || || ||| || ||||| | || || || || ||||| || |||| | | Sbjct 3253132 ATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTCAATACTATCTTCCCTCATTGAT 3253191 Query 80301 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 80360 || |||||||| ||||| | || | ||| || || |||||||| | ||||||||| Sbjct 3253192 AAA-AGAAAACAACTAGATAGCTGAGGTCGAGGTGTACCAGCATTAAAAAGGGTAGGAGA 3253250 Query 80361 AGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC 80420 ||| || ||||||||||||| ||||| || | ||| |||| | |||||||| ||||| Sbjct 3253251 AGCATGTGTAAACCATTTTTGAGACATTAATTCGTAGGTCTGTAAGGCTGATTCAATATC 3253310 Query 80421 CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 80480 || ||||||||| || || || | ||||| ||| || || || |||||||| | || Sbjct 3253311 AGATCCATGAATTCCAACAGCAACTCTCATTAGCATATGTTGCGGCCTTTCAACTACTTT 3253370 Query 80481 GTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATA 80531 ||| ||||| | | ||| ||| ||||||| ||||| ||||||||||| Sbjct 3253371 ACCATTGATTTTAAGAAGGTATGATCTTTCCAAGGTTTTGAAACCAAAATA 3253421 >seq468 Length=1118636 Score = 262 bits (290), Expect = 6e-65 Identities = 530/780 (68%), Gaps = 5/780 (1%) Strand=Plus/Plus Query 49777 AATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTC 49836 |||||| | |||||| || || ||||| || || ||| |||||||| ||| Sbjct 1106096 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 1106155 Query 49837 ATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCA 49896 |||||||| || |||||| | ||| | || | ||||| || || || || ||| Sbjct 1106156 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 1106215 Query 49897 TCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATC 49956 ||| | || | || ||| |||||||||| | | | || |||||| | | Sbjct 1106216 TCTCGCACTATTTCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAAC 1106275 Query 49957 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 50016 ||||| || ||||| || || | || || |||| | || |||||||| || || || Sbjct 1106276 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 1106335 Query 50017 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAG 50076 | || ||||| ||||||||||||||||||||||| || | || || || || || || Sbjct 1106336 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 1106395 Query 50077 AAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTCAT- 50134 ||||| ||||| || |||||||||| | ||| || || || | | | || | Sbjct 1106396 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGATTT 1106455 Query 50135 GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 50193 | | |||| ||| ||||| || ||||| | ||||| || | ||||| || || Sbjct 1106456 GCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCT 1106515 Query 50194 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253 || || ||| | | | | | ||| | | ||||| || |||| || || ||| Sbjct 1106516 TTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTAC 1106575 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 || || || || | || ||||| || || ||||| || || ||||||| ||| |||||| Sbjct 1106576 ATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTA 1106635 Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 ||||| | || | ||||| |||||||||||||||||| || || ||||| ||| Sbjct 1106636 ATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCA 1106695 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCCA 50432 | || || ||||| |||| | |||||||| ||| || ||| || ||| ||| Sbjct 1106696 GAGAAGAATGCCAACACATAGCTGATAAAATGACGTTC-TTCATCGTTAAGCTTAGCCCA 1106754 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 ||| | | |||| ||||| || || ||||| || ||||| || || || || || || Sbjct 1106755 GTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTT 1106814 Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 |||||||| | ||| || ||| |||| | || ||||| | |||||| | ||| ||||| Sbjct 1106815 CTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGATT 1106874 >seq453 Length=2394413 Score = 262 bits (290), Expect = 6e-65 Identities = 530/780 (68%), Gaps = 5/780 (1%) Strand=Plus/Plus Query 49777 AATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTC 49836 |||||| | |||||| || || ||||| || || ||| |||||||| ||| Sbjct 11548 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 11607 Query 49837 ATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCA 49896 |||||||| || |||||| | ||| | || | ||||| || || || || ||| Sbjct 11608 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 11667 Query 49897 TCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATC 49956 ||| | || | || ||| |||||||||| | | | || |||||| | | Sbjct 11668 TCTCGCACTATTTCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAAC 11727 Query 49957 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 50016 ||||| || ||||| || || | || || |||| | || |||||||| || || || Sbjct 11728 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 11787 Query 50017 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAG 50076 | || ||||| ||||||||||||||||||||||| || | || || || || || || Sbjct 11788 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 11847 Query 50077 AAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTCAT- 50134 ||||| ||||| || |||||||||| | ||| || || || | | | || | Sbjct 11848 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGATTT 11907 Query 50135 GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 50193 | | |||| ||| ||||| || ||||| | ||||| || | ||||| || || Sbjct 11908 GCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCT 11967 Query 50194 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253 || || ||| | | | | | ||| | | ||||| || |||| || || ||| Sbjct 11968 TTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTAC 12027 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 || || || || | || ||||| || || ||||| || || ||||||| ||| |||||| Sbjct 12028 ATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTA 12087 Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 ||||| | || | ||||| |||||||||||||||||| || || ||||| ||| Sbjct 12088 ATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCA 12147 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCCA 50432 | || || ||||| |||| | |||||||| ||| || ||| || ||| ||| Sbjct 12148 GAGAAGAATGCCAACACATAGCTGATAAAATGACGTTC-TTCATCGTTAAGCTTAGCCCA 12206 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 ||| | | |||| ||||| || || ||||| || ||||| || || || || || || Sbjct 12207 GTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTT 12266 Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 |||||||| | ||| || ||| |||| | || ||||| | |||||| | ||| ||||| Sbjct 12267 CTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGATT 12326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718263044871240