Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq468 246 3e-60 seq453 246 3e-60 >seq468 Length=1118636 Score = 246 bits (272), Expect = 3e-60 Identities = 523/775 (67%), Gaps = 12/775 (2%) Strand=Plus/Plus Query 13687 CTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAAT 13746 ||| ||| | || ||||| || |||| ||||||||| ||||| | ||| | | | Sbjct 1106094 CTAATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGT 1106153 Query 13747 TCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAG 13806 |||| ||||| || || || | | | ||||||||||| | || || ||||| Sbjct 1106154 TCATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAG 1106213 Query 13807 CCTCTTTTA-TAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAG----ATGTTT 13861 | ||| | || | ||| |||||| | | | || | ||||| || ||| Sbjct 1106214 CATCTCGCACTATTTCTTG-AATAATTTTTTCACTCGG----TCTTTTAACAACATATTT 1106268 Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921 ||| | ||||| |||||||||||||| | || ||||||| | ||||||||||| || Sbjct 1106269 AAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGA 1106328 Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981 || ||||| |||||||||| || || ||||| | |||||| || || || || || || Sbjct 1106329 GAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCC 1106388 Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041 || || || || || ||||| ||||| || || |||| ||| |||| || || Sbjct 1106389 TGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGA 1106448 Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101 | || | |||| ||| | |||||||||| |||| || | | | ||||| Sbjct 1106449 TGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTC 1106508 Query 14102 AATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAA 14161 |||||| || || | | | ||| || | || | ||||| || || || |||| Sbjct 1106509 AATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAG 1106568 Query 14162 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGC 14221 ||| ||||| |||||||| | || || || || || |||||||||||||| |||| ||| Sbjct 1106569 GCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGC 1106628 Query 14222 TTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280 ||| | || | || ||| | ||||||||| || ||||||||||| || ||||| | Sbjct 1106629 TTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAATACCGT 1106687 Query 14281 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14340 | || | || |||||||| | | | ||||| | | ||||||| ||| || | Sbjct 1106688 CTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCT 1106747 Query 14341 TTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14400 | ||| || | |||||| ||| | || || || ||||| ||||| || || Sbjct 1106748 TAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTT 1106807 Query 14401 CAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 ||||||| ||||||||| |||| || || ||| ||||| || || ||||| Sbjct 1106808 CAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAA 1106862 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 13579 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13638 ||||||||||||||| ||| ||||| || || ||||| |||||||| |||| || || | Sbjct 1105889 TTTTTTGATATTCACCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 1105948 Query 13639 TTTCCATAAAATCAAATGGATT 13660 |||||||||||||||||||| Sbjct 1105949 GATCCATAAAATCAAATGGATT 1105970 >seq453 Length=2394413 Score = 246 bits (272), Expect = 3e-60 Identities = 523/775 (67%), Gaps = 12/775 (2%) Strand=Plus/Plus Query 13687 CTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAAT 13746 ||| ||| | || ||||| || |||| ||||||||| ||||| | ||| | | | Sbjct 11546 CTAATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGT 11605 Query 13747 TCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAG 13806 |||| ||||| || || || | | | ||||||||||| | || || ||||| Sbjct 11606 TCATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAG 11665 Query 13807 CCTCTTTTA-TAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAG----ATGTTT 13861 | ||| | || | ||| |||||| | | | || | ||||| || ||| Sbjct 11666 CATCTCGCACTATTTCTTG-AATAATTTTTTCACTCGG----TCTTTTAACAACATATTT 11720 Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921 ||| | ||||| |||||||||||||| | || ||||||| | ||||||||||| || Sbjct 11721 AAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGA 11780 Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981 || ||||| |||||||||| || || ||||| | |||||| || || || || || || Sbjct 11781 GAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCC 11840 Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041 || || || || || ||||| ||||| || || |||| ||| |||| || || Sbjct 11841 TGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGA 11900 Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101 | || | |||| ||| | |||||||||| |||| || | | | ||||| Sbjct 11901 TGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTC 11960 Query 14102 AATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAA 14161 |||||| || || | | | ||| || | || | ||||| || || || |||| Sbjct 11961 AATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAG 12020 Query 14162 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGC 14221 ||| ||||| |||||||| | || || || || || |||||||||||||| |||| ||| Sbjct 12021 GCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGC 12080 Query 14222 TTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280 ||| | || | || ||| | ||||||||| || ||||||||||| || ||||| | Sbjct 12081 TTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAATACCGT 12139 Query 14281 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14340 | || | || |||||||| | | | ||||| | | ||||||| ||| || | Sbjct 12140 CTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCT 12199 Query 14341 TTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14400 | ||| || | |||||| ||| | || || || ||||| ||||| || || Sbjct 12200 TAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTT 12259 Query 14401 CAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 ||||||| ||||||||| |||| || || ||| ||||| || || ||||| Sbjct 12260 CAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAA 12314 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 13579 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13638 ||||||||||||| | ||| ||||| || || ||||| |||||||| |||| || || | Sbjct 11341 TTTTTTGATATTCGCCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 11400 Query 13639 TTTCCATAAAATCAAATGGATT 13660 |||||||||||||||||||| Sbjct 11401 GATCCATAAAATCAAATGGATT 11422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479724156179400