Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq468 246 3e-60
seq453 246 3e-60
>seq468
Length=1118636
Score = 246 bits (272), Expect = 3e-60
Identities = 523/775 (67%), Gaps = 12/775 (2%)
Strand=Plus/Plus
Query 13687 CTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAAT 13746
||| ||| | || ||||| || |||| ||||||||| ||||| | ||| | | |
Sbjct 1106094 CTAATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGT 1106153
Query 13747 TCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAG 13806
|||| ||||| || || || | | | ||||||||||| | || || |||||
Sbjct 1106154 TCATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAG 1106213
Query 13807 CCTCTTTTA-TAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAG----ATGTTT 13861
| ||| | || | ||| |||||| | | | || | ||||| || |||
Sbjct 1106214 CATCTCGCACTATTTCTTG-AATAATTTTTTCACTCGG----TCTTTTAACAACATATTT 1106268
Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921
||| | ||||| |||||||||||||| | || ||||||| | ||||||||||| ||
Sbjct 1106269 AAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGA 1106328
Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981
|| ||||| |||||||||| || || ||||| | |||||| || || || || || ||
Sbjct 1106329 GAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCC 1106388
Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041
|| || || || || ||||| ||||| || || |||| ||| |||| || ||
Sbjct 1106389 TGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGA 1106448
Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101
| || | |||| ||| | |||||||||| |||| || | | | |||||
Sbjct 1106449 TGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTC 1106508
Query 14102 AATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAA 14161
|||||| || || | | | ||| || | || | ||||| || || || ||||
Sbjct 1106509 AATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAG 1106568
Query 14162 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGC 14221
||| ||||| |||||||| | || || || || || |||||||||||||| |||| |||
Sbjct 1106569 GCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGC 1106628
Query 14222 TTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280
||| | || | || ||| | ||||||||| || ||||||||||| || ||||| |
Sbjct 1106629 TTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAATACCGT 1106687
Query 14281 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14340
| || | || |||||||| | | | ||||| | | ||||||| ||| || |
Sbjct 1106688 CTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCT 1106747
Query 14341 TTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14400
| ||| || | |||||| ||| | || || || ||||| ||||| || ||
Sbjct 1106748 TAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTT 1106807
Query 14401 CAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455
||||||| ||||||||| |||| || || ||| ||||| || || |||||
Sbjct 1106808 CAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAA 1106862
Score = 89.7 bits (98), Expect = 5e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 13579 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13638
||||||||||||||| ||| ||||| || || ||||| |||||||| |||| || || |
Sbjct 1105889 TTTTTTGATATTCACCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 1105948
Query 13639 TTTCCATAAAATCAAATGGATT 13660
||||||||||||||||||||
Sbjct 1105949 GATCCATAAAATCAAATGGATT 1105970
>seq453
Length=2394413
Score = 246 bits (272), Expect = 3e-60
Identities = 523/775 (67%), Gaps = 12/775 (2%)
Strand=Plus/Plus
Query 13687 CTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAAT 13746
||| ||| | || ||||| || |||| ||||||||| ||||| | ||| | | |
Sbjct 11546 CTAATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGT 11605
Query 13747 TCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAG 13806
|||| ||||| || || || | | | ||||||||||| | || || |||||
Sbjct 11606 TCATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAG 11665
Query 13807 CCTCTTTTA-TAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAG----ATGTTT 13861
| ||| | || | ||| |||||| | | | || | ||||| || |||
Sbjct 11666 CATCTCGCACTATTTCTTG-AATAATTTTTTCACTCGG----TCTTTTAACAACATATTT 11720
Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921
||| | ||||| |||||||||||||| | || ||||||| | ||||||||||| ||
Sbjct 11721 AAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGA 11780
Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981
|| ||||| |||||||||| || || ||||| | |||||| || || || || || ||
Sbjct 11781 GAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCC 11840
Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041
|| || || || || ||||| ||||| || || |||| ||| |||| || ||
Sbjct 11841 TGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGA 11900
Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101
| || | |||| ||| | |||||||||| |||| || | | | |||||
Sbjct 11901 TGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTC 11960
Query 14102 AATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAA 14161
|||||| || || | | | ||| || | || | ||||| || || || ||||
Sbjct 11961 AATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAG 12020
Query 14162 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGC 14221
||| ||||| |||||||| | || || || || || |||||||||||||| |||| |||
Sbjct 12021 GCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGC 12080
Query 14222 TTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280
||| | || | || ||| | ||||||||| || ||||||||||| || ||||| |
Sbjct 12081 TTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAATACCGT 12139
Query 14281 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14340
| || | || |||||||| | | | ||||| | | ||||||| ||| || |
Sbjct 12140 CTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCT 12199
Query 14341 TTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14400
| ||| || | |||||| ||| | || || || ||||| ||||| || ||
Sbjct 12200 TAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTT 12259
Query 14401 CAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455
||||||| ||||||||| |||| || || ||| ||||| || || |||||
Sbjct 12260 CAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAA 12314
Score = 86.0 bits (94), Expect = 6e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 13579 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13638
||||||||||||| | ||| ||||| || || ||||| |||||||| |||| || || |
Sbjct 11341 TTTTTTGATATTCGCCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 11400
Query 13639 TTTCCATAAAATCAAATGGATT 13660
||||||||||||||||||||
Sbjct 11401 GATCCATAAAATCAAATGGATT 11422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479724156179400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |