Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq468 239 4e-58 seq453 239 4e-58 >seq468 Length=1118636 Score = 239 bits (264), Expect = 4e-58 Identities = 415/601 (69%), Gaps = 2/601 (0%) Strand=Plus/Plus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 || |||||| | ||||| |||||||||||||| | || ||||||| | |||||||| Sbjct 1106263 ATATTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTC 1106322 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 ||| || || ||||| |||||||||| || || ||||| | |||||| || || ||||| Sbjct 1106323 GTTAGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAA 1106382 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 || || || || || || || ||||| ||||| || || | || ||| |||| || Sbjct 1106383 AGAGCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGA 1106442 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 13883 || | |||| |||| ||| | |||||||||| |||| || | | | Sbjct 1106443 GACTGATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGAC 1106502 Query 13884 TGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943 ||||| || || ||||| | | ||| || | || | ||||| || || || Sbjct 1106503 AGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTAT 1106562 Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 |||| ||| ||||| |||||||| | || || || || || ||||||||||||||||| Sbjct 1106563 CAGTAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACA 1106622 Query 14004 TCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAA 14062 || |||||| | || | || ||| | ||||||||| || || |||||||| |||| Sbjct 1106623 TCGAGCTTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAA 1106681 Query 14063 TACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14122 |||| || || | || |||||||| | | | ||||| | | ||||||| || Sbjct 1106682 TACCGTCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT 1106741 Query 14123 TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14182 | || || ||| || | |||||| ||| | || || || ||||| ||||| || Sbjct 1106742 TAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACG 1106801 Query 14183 TAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAA 14242 || ||||||| ||||||||| |||| || || ||| ||||| || || |||| Sbjct 1106802 AGGCTTCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAA 1106861 Query 14243 A 14243 | Sbjct 1106862 A 1106862 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 13367 ttttttGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATAT 13426 ||||||||||||||| ||| ||||| || |||||||| |||||||| |||| || || | Sbjct 1105889 TTTTTTGATATTCACCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 1105948 Query 13427 TTTCCATAAAATCGAATGGATT 13448 ||||||||||| |||||||| Sbjct 1105949 GATCCATAAAATCAAATGGATT 1105970 >seq453 Length=2394413 Score = 239 bits (264), Expect = 4e-58 Identities = 415/601 (69%), Gaps = 2/601 (0%) Strand=Plus/Plus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 || |||||| | ||||| |||||||||||||| | || ||||||| | |||||||| Sbjct 11715 ATATTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTC 11774 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 ||| || || ||||| |||||||||| || || ||||| | |||||| || || ||||| Sbjct 11775 GTTAGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAA 11834 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 || || || || || || || ||||| ||||| || || | || ||| |||| || Sbjct 11835 AGAGCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGA 11894 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 13883 || | |||| |||| ||| | |||||||||| |||| || | | | Sbjct 11895 GACTGATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGAC 11954 Query 13884 TGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943 ||||| || || ||||| | | ||| || | || | ||||| || || || Sbjct 11955 AGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTAT 12014 Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 |||| ||| ||||| |||||||| | || || || || || ||||||||||||||||| Sbjct 12015 CAGTAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACA 12074 Query 14004 TCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAA 14062 || |||||| | || | || ||| | ||||||||| || || |||||||| |||| Sbjct 12075 TCGAGCTTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAA 12133 Query 14063 TACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14122 |||| || || | || |||||||| | | | ||||| | | ||||||| || Sbjct 12134 TACCGTCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT 12193 Query 14123 TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14182 | || || ||| || | |||||| ||| | || || || ||||| ||||| || Sbjct 12194 TAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACG 12253 Query 14183 TAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAA 14242 || ||||||| ||||||||| |||| || || ||| ||||| || || |||| Sbjct 12254 AGGCTTCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAA 12313 Query 14243 A 14243 | Sbjct 12314 A 12314 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 13367 ttttttGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATAT 13426 ||||||||||||| | ||| ||||| || |||||||| |||||||| |||| || || | Sbjct 11341 TTTTTTGATATTCGCCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 11400 Query 13427 TTTCCATAAAATCGAATGGATT 13448 ||||||||||| |||||||| Sbjct 11401 GATCCATAAAATCAAATGGATT 11422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478584965307240