Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq468 239 4e-58
seq453 239 4e-58
>seq468
Length=1118636
Score = 239 bits (264), Expect = 4e-58
Identities = 415/601 (69%), Gaps = 2/601 (0%)
Strand=Plus/Plus
Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703
|| |||||| | ||||| |||||||||||||| | || ||||||| | ||||||||
Sbjct 1106263 ATATTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTC 1106322
Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763
||| || || ||||| |||||||||| || || ||||| | |||||| || || |||||
Sbjct 1106323 GTTAGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAA 1106382
Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823
|| || || || || || || ||||| ||||| || || | || ||| |||| ||
Sbjct 1106383 AGAGCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGA 1106442
Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 13883
|| | |||| |||| ||| | |||||||||| |||| || | | |
Sbjct 1106443 GACTGATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGAC 1106502
Query 13884 TGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943
||||| || || ||||| | | ||| || | || | ||||| || || ||
Sbjct 1106503 AGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTAT 1106562
Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003
|||| ||| ||||| |||||||| | || || || || || |||||||||||||||||
Sbjct 1106563 CAGTAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACA 1106622
Query 14004 TCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAA 14062
|| |||||| | || | || ||| | ||||||||| || || |||||||| ||||
Sbjct 1106623 TCGAGCTTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAA 1106681
Query 14063 TACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14122
|||| || || | || |||||||| | | | ||||| | | ||||||| ||
Sbjct 1106682 TACCGTCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT 1106741
Query 14123 TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14182
| || || ||| || | |||||| ||| | || || || ||||| ||||| ||
Sbjct 1106742 TAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACG 1106801
Query 14183 TAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAA 14242
|| ||||||| ||||||||| |||| || || ||| ||||| || || ||||
Sbjct 1106802 AGGCTTCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAA 1106861
Query 14243 A 14243
|
Sbjct 1106862 A 1106862
Score = 89.7 bits (98), Expect = 5e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 13367 ttttttGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATAT 13426
||||||||||||||| ||| ||||| || |||||||| |||||||| |||| || || |
Sbjct 1105889 TTTTTTGATATTCACCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 1105948
Query 13427 TTTCCATAAAATCGAATGGATT 13448
||||||||||| ||||||||
Sbjct 1105949 GATCCATAAAATCAAATGGATT 1105970
>seq453
Length=2394413
Score = 239 bits (264), Expect = 4e-58
Identities = 415/601 (69%), Gaps = 2/601 (0%)
Strand=Plus/Plus
Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703
|| |||||| | ||||| |||||||||||||| | || ||||||| | ||||||||
Sbjct 11715 ATATTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTC 11774
Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763
||| || || ||||| |||||||||| || || ||||| | |||||| || || |||||
Sbjct 11775 GTTAGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAA 11834
Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823
|| || || || || || || ||||| ||||| || || | || ||| |||| ||
Sbjct 11835 AGAGCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGA 11894
Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 13883
|| | |||| |||| ||| | |||||||||| |||| || | | |
Sbjct 11895 GACTGATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGAC 11954
Query 13884 TGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943
||||| || || ||||| | | ||| || | || | ||||| || || ||
Sbjct 11955 AGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTAT 12014
Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003
|||| ||| ||||| |||||||| | || || || || || |||||||||||||||||
Sbjct 12015 CAGTAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACA 12074
Query 14004 TCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAA 14062
|| |||||| | || | || ||| | ||||||||| || || |||||||| ||||
Sbjct 12075 TCGAGCTTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAA 12133
Query 14063 TACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14122
|||| || || | || |||||||| | | | ||||| | | ||||||| ||
Sbjct 12134 TACCGTCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT 12193
Query 14123 TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14182
| || || ||| || | |||||| ||| | || || || ||||| ||||| ||
Sbjct 12194 TAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACG 12253
Query 14183 TAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAA 14242
|| ||||||| ||||||||| |||| || || ||| ||||| || || ||||
Sbjct 12254 AGGCTTCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAA 12313
Query 14243 A 14243
|
Sbjct 12314 A 12314
Score = 86.0 bits (94), Expect = 6e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 13367 ttttttGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATAT 13426
||||||||||||| | ||| ||||| || |||||||| |||||||| |||| || || |
Sbjct 11341 TTTTTTGATATTCGCCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 11400
Query 13427 TTTCCATAAAATCGAATGGATT 13448
||||||||||| ||||||||
Sbjct 11401 GATCCATAAAATCAAATGGATT 11422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478584965307240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |