Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq444 104 2e-17 >seq444 Length=5217058 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| ||| ||||| || | || ||| ||||| | ||||||||| | Sbjct 3542377 CCACCACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTC 3542436 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || || | ||||| || || || ||||| ||||||||||||| || Sbjct 3542437 AGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGG 3542496 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| |||| || | ||| ||||| | || || Sbjct 3542497 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACC 3542556 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || ||||| || || ||||||||||| Sbjct 3542557 TCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 42922 TTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATC 42981 ||||| | ||| ||||| || ||||||||| | || || | |||||| || || || ||| Sbjct 3542188 TTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGATC 3542247 Query 42982 AATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCA 43041 || || ||||| |||| || | |||||| || || ||| | ||||| | || Sbjct 3542248 AAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCA 3542307 Query 43042 ACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAA 43101 | || ||| || || || || | || || |||||||| || || ||||| || ||| Sbjct 3542308 ATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGAAA 3542367 Query 43102 ATTTGCAT 43109 |||||||| Sbjct 3542368 ATTTGCAT 3542375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381366620669178