Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq442 672 0.0 seq468 253 3e-62 seq453 253 3e-62 >seq442 Length=7801961 Score = 672 bits (744), Expect = 0.0 Identities = 1235/1798 (69%), Gaps = 31/1798 (2%) Strand=Plus/Plus Query 70834 CGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTT 70893 |||| |||||||||||||| || || || || ||| || || |||||||| || Sbjct 3251638 CGTAAGTAGTACATGCCTGTCTTAAGCCCAAGCTCCCAGCCATAGAAATGCATCGAGGTC 3251697 Query 70894 AGTTTGG-AATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAA 70952 | ||| | || || ||| | | |||||||| | || ||||||||||| || || Sbjct 3251698 ATTTTAGCAACAGA-AGGTCTTTCAAAATGAATATTTAAAGATTGACTTTGATCAATAAA 3251756 Query 70953 GGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTT 71012 ||||| | || |||||||||| | || | ||||| ||||||||||||| |||| Sbjct 3251757 AGCTCCACGTTCAGCAGCCATTTCCAGAATATTTTTTTGAGGAATTTCCCAAACAGTTCG 3251816 Query 71013 ATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCTGC 71069 ||| | | |||||||||| ||||| | | | | |||||||| || | | Sbjct 3251817 ATACAATTGCTTAATATCCTCTGGGATACCTTCAATAGCTTGAATGGAGCCTCTGTGATA 3251876 Query 71070 AATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAG 71129 ||||||| | | | || ||||||||||| | || || || || ||| || | | || Sbjct 3251877 AATAATCTGTTCTCTCATGTCTTCATTCCAAAGTTCTCGATCAGTCAAATCTTTGACAAG 3251936 Query 71130 ATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGT 71189 ||| | ||||||||||||||||| ||||| | |||| ||||| || || ||||| || Sbjct 3251937 ATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATAGATGTTACTTGT 3251996 Query 71190 ATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 71249 ||| ||||| | || || || || |||||||| |||||||||||||| || ||||| || Sbjct 3251997 ATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGGCATGGG 3252056 Query 71250 TGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCA 71309 || | || ||||| |||| |||||||||| |||||| || || | ||| Sbjct 3252057 CGCTAATAACAGACTGTTTCGAAGACCATGTTTAGCAATTTTACTCTTCAGCTCTGTCCA 3252116 Query 71310 ATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGC 71369 | ||| |||| |||||| || || || ||| ||| Sbjct 3252117 GTCCCACAGATTAGATGGTGTTACACCCCACATATCATATTGCAAAATCCCTTTAGAAGC 3252176 Query 71370 GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTC 71429 | ||||||||||| || ||||| ||||| || ||| || || |||||||| || || Sbjct 3252177 GGGAGATCCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGCTCACAACTTGCTTC 3252236 Query 71430 TAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCT 71489 | ||||||||||| || || || || || | ||| | | | ||||| ||||| Sbjct 3252237 GAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTACGAGCTTCTGGGCT 3252296 Query 71490 ATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGAT 71549 ||||||||||| | | | || ||| ||||||||||| |||||||| || | || || Sbjct 3252297 GTCAAATGGATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGAACTCCTAAGCCAAT 3252356 Query 71550 AGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 71609 ||||| | | || || ||| ||||| | ||||||| | || || || || Sbjct 3252357 AGGTCGATTCTTTTTGTTTGAATAAGAGGCTTCCTTTAGAGGATAAAAGTTGATCTCAAT 3252416 Query 71610 AATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATC 71666 |||||| || | ||||| |||| ||||| || || || ||| | |||||| Sbjct 3252417 AATTTTGTTTAAATTTCGTGTGACCG---CTTTGGTAACTTCTTTGAGTCTTGCAAAATC 3252473 Query 71667 AAATCTCC---CATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGC 71723 |||| | | || | ||||| |||||||| | ||| || ||||||||||| || Sbjct 3252474 AAATTTTTGTTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGCAAGATTACAAACAGC 3252533 Query 71724 TACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGT 71783 || |||| || | ||||| | |||||||||||| ||||| |||||||||||| Sbjct 3252534 AACTTCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATTTGAACACTTGATGGT 3252593 Query 71784 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGT 71843 ||| | ||||| ||||| ||||| ||||| ||| |||||||| ||| ||||| Sbjct 3252594 TCCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATAAAGCATATACGGAAC 3252653 Query 71844 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATT 71903 ||||||||| ||||| | || || || |||| ||| | ||||||| |||||| | Sbjct 3252654 ACCAGTTTCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCGAGCTTTTATTTGCTG 3252713 Query 71904 CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAAG 71962 |||||||| |||||| ||| |||| ||| || | | | ||| || ||||| || Sbjct 3252714 ATTGTATCTTTTTTCTTCTTCATATTTAACATA-AAGCTTATTGAATTCATCTCCATAAA 3252772 Query 71963 CATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTA 72022 | | | || |||||||||| | |||||||| | |||| | |||| | || | Sbjct 3252773 CTTCGAATAGACCAGGACATTTGTGTGGACACATAAGACTCCACATTTCATCTTTTTTAA 3252832 Query 72023 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCT 72082 |||| | |||||| |||| ||| | ||||||||||| ||| | ||||| | ||| || Sbjct 3252833 CTCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAATCTCGAGCTCTCATCT 3252892 Query 72083 CCTCGTTTCCTGTATTCTTT-TTAAG-ATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 | || || || || || ||| ||||| || ||||| | | | ||||| |||||| || Sbjct 3252893 CTTCTTTACCAGTGTTTTTTCTTAAGCAT--AGGAAATCAAAGACATCAGCATGCCAAGG 3252950 Query 72141 TTCCAAGTATATGGCCATAA-CTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 72199 || | || || || |||| |||| || ||||| || || || | | || | || Sbjct 3252951 CTCAATATAAATAGC-ATAAGCTCCTGGTCGTTTA---CCCCCTTGGTTGACATAACGAG 3253006 Query 72200 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGG 72259 | | | |||| | | | ||| ||| || | | ||||| || |||||| ||||| Sbjct 3253007 CAGATTCATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGAAACCATTTGTCCCTC 3253066 Query 72260 AGATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCAT 72317 ||| | |||| | || |||||| || ||||| |||| ||||| || || Sbjct 3253067 TGATTCGGGTTCCTTTCGCTCGAATACAATGAACATTGA--GACCAATTCCACCAGCATA 3253124 Query 72318 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 72377 |||||| || || || ||| || ||||| | || || || |||||||| ||| | Sbjct 3253125 TTTAGAAATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTCAATACTATCTTCCCT 3253184 Query 72378 CAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGG 72436 ||| | ||| |||||||| ||||| | || | ||| || || |||||||| | || Sbjct 3253185 CATTGATAAA-AGAAAACAACTAGATAGCTGAGGTCGAGGTGTACCAGCATTAAAAAGGG 3253243 Query 72437 TAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATT 72496 |||||||||| || ||||||||||||| ||||| || | ||| |||| | ||||||| Sbjct 3253244 TAGGAGAAGCATGTGTAAACCATTTTTGAGACATTAATTCGTAGGTCTGTAAGGCTGATT 3253303 Query 72497 CTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAA 72556 | ||||| || ||| ||||| || || || | ||||| |||||| || || ||||||| Sbjct 3253304 CAATATCAGATCCATGAATTCCAACAGCAACTCTCATTAGCATATGTTGCGGCCTTTCAA 3253363 Query 72557 CGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 72614 | | || ||| ||||| | | ||| ||| ||||||| ||||| ||||||||||| Sbjct 3253364 CTACTTTACCATTGATTTTAAGAAGGTATGATCTTTCCAAGGTTTTGAAACCAAAATA 3253421 >seq468 Length=1118636 Score = 253 bits (280), Expect = 3e-62 Identities = 533/789 (68%), Gaps = 23/789 (3%) Strand=Plus/Plus Query 41882 AATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTC 41941 |||||| | |||||| ||||| | || || || ||| |||||||| ||| Sbjct 1106096 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 1106155 Query 41942 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 42001 |||||||| || |||||| | ||| | || | ||||| || || || || || Sbjct 1106156 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 1106215 Query 42002 TCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 42059 ||| | || |||| | ||| |||||||||| | | | || |||||| | Sbjct 1106216 TCTCGCACTATT--TCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATA 1106273 Query 42060 TCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACG 42119 |||||| || ||||| || || | || ||||||| | || | |||||| || || | Sbjct 1106274 ACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAG 1106333 Query 42120 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAA 42179 | | || ||||| ||||||||||||||||||||||| |||| || || || || || | Sbjct 1106334 TTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGA 1106393 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 42239 | ||||| ||||| || ||||||||||| | ||| || || || | |||| || Sbjct 1106394 AAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAG--ACTG--AT 1106449 Query 42240 GTAT-------CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | || ||| ||| ||||| || ||||| | ||||| || | ||||| Sbjct 1106450 GGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCA 1106509 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 || || || || ||| | | | | | ||| | | || || || |||| || Sbjct 1106510 ATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGG 1106569 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 || ||||| || || || | || ||||| || || ||||| || || ||||||| || Sbjct 1106570 CTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCT 1106629 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 ||||||| ||| | || | ||||| ||||||||||||||| || || || ||||| Sbjct 1106630 TCGGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCT 1106689 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCCGGTGTTAA- 42528 ||| | || || ||||| |||| | ||||||| || ||| || ||||| Sbjct 1106690 GAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATC----GTTAAG 1106745 Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588 ||| ||| ||| | | |||| ||||| || || ||||| || ||||| || || || Sbjct 1106746 CTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGC 1106805 Query 42589 TTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 ||| || || |||||||| | ||| |||||| |||| | ||| ||||| | |||||| | Sbjct 1106806 TTCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACG 1106865 Query 42649 ATTTGGATT 42657 ||| ||||| Sbjct 1106866 ATTAGGATT 1106874 >seq453 Length=2394413 Score = 253 bits (280), Expect = 3e-62 Identities = 533/789 (68%), Gaps = 23/789 (3%) Strand=Plus/Plus Query 41882 AATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTC 41941 |||||| | |||||| ||||| | || || || ||| |||||||| ||| Sbjct 11548 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 11607 Query 41942 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 42001 |||||||| || |||||| | ||| | || | ||||| || || || || || Sbjct 11608 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 11667 Query 42002 TCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 42059 ||| | || |||| | ||| |||||||||| | | | || |||||| | Sbjct 11668 TCTCGCACTATT--TCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATA 11725 Query 42060 TCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACG 42119 |||||| || ||||| || || | || ||||||| | || | |||||| || || | Sbjct 11726 ACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAG 11785 Query 42120 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAA 42179 | | || ||||| ||||||||||||||||||||||| |||| || || || || || | Sbjct 11786 TTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGA 11845 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 42239 | ||||| ||||| || ||||||||||| | ||| || || || | |||| || Sbjct 11846 AAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAG--ACTG--AT 11901 Query 42240 GTAT-------CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | || ||| ||| ||||| || ||||| | ||||| || | ||||| Sbjct 11902 GGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCA 11961 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 || || || || ||| | | | | | ||| | | || || || |||| || Sbjct 11962 ATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGG 12021 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 || ||||| || || || | || ||||| || || ||||| || || ||||||| || Sbjct 12022 CTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCT 12081 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 ||||||| ||| | || | ||||| ||||||||||||||| || || || ||||| Sbjct 12082 TCGGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCT 12141 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCCGGTGTTAA- 42528 ||| | || || ||||| |||| | ||||||| || ||| || ||||| Sbjct 12142 GAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATC----GTTAAG 12197 Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588 ||| ||| ||| | | |||| ||||| || || ||||| || ||||| || || || Sbjct 12198 CTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGC 12257 Query 42589 TTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 ||| || || |||||||| | ||| |||||| |||| | ||| ||||| | |||||| | Sbjct 12258 TTCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACG 12317 Query 42649 ATTTGGATT 42657 ||| ||||| Sbjct 12318 ATTAGGATT 12326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671133822497160