Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq442 672 0.0
seq468 253 3e-62
seq453 253 3e-62
>seq442
Length=7801961
Score = 672 bits (744), Expect = 0.0
Identities = 1235/1798 (69%), Gaps = 31/1798 (2%)
Strand=Plus/Plus
Query 70834 CGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTT 70893
|||| |||||||||||||| || || || || ||| || || |||||||| ||
Sbjct 3251638 CGTAAGTAGTACATGCCTGTCTTAAGCCCAAGCTCCCAGCCATAGAAATGCATCGAGGTC 3251697
Query 70894 AGTTTGG-AATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAA 70952
| ||| | || || ||| | | |||||||| | || ||||||||||| || ||
Sbjct 3251698 ATTTTAGCAACAGA-AGGTCTTTCAAAATGAATATTTAAAGATTGACTTTGATCAATAAA 3251756
Query 70953 GGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTT 71012
||||| | || |||||||||| | || | ||||| ||||||||||||| ||||
Sbjct 3251757 AGCTCCACGTTCAGCAGCCATTTCCAGAATATTTTTTTGAGGAATTTCCCAAACAGTTCG 3251816
Query 71013 ATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCTGC 71069
||| | | |||||||||| ||||| | | | | |||||||| || | |
Sbjct 3251817 ATACAATTGCTTAATATCCTCTGGGATACCTTCAATAGCTTGAATGGAGCCTCTGTGATA 3251876
Query 71070 AATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAG 71129
||||||| | | | || ||||||||||| | || || || || ||| || | | ||
Sbjct 3251877 AATAATCTGTTCTCTCATGTCTTCATTCCAAAGTTCTCGATCAGTCAAATCTTTGACAAG 3251936
Query 71130 ATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGT 71189
||| | ||||||||||||||||| ||||| | |||| ||||| || || ||||| ||
Sbjct 3251937 ATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATAGATGTTACTTGT 3251996
Query 71190 ATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 71249
||| ||||| | || || || || |||||||| |||||||||||||| || ||||| ||
Sbjct 3251997 ATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGGCATGGG 3252056
Query 71250 TGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCA 71309
|| | || ||||| |||| |||||||||| |||||| || || | |||
Sbjct 3252057 CGCTAATAACAGACTGTTTCGAAGACCATGTTTAGCAATTTTACTCTTCAGCTCTGTCCA 3252116
Query 71310 ATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGC 71369
| ||| |||| |||||| || || || ||| |||
Sbjct 3252117 GTCCCACAGATTAGATGGTGTTACACCCCACATATCATATTGCAAAATCCCTTTAGAAGC 3252176
Query 71370 GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTC 71429
| ||||||||||| || ||||| ||||| || ||| || || |||||||| || ||
Sbjct 3252177 GGGAGATCCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGCTCACAACTTGCTTC 3252236
Query 71430 TAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCT 71489
| ||||||||||| || || || || || | ||| | | | ||||| |||||
Sbjct 3252237 GAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTACGAGCTTCTGGGCT 3252296
Query 71490 ATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGAT 71549
||||||||||| | | | || ||| ||||||||||| |||||||| || | || ||
Sbjct 3252297 GTCAAATGGATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGAACTCCTAAGCCAAT 3252356
Query 71550 AGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 71609
||||| | | || || ||| ||||| | ||||||| | || || || ||
Sbjct 3252357 AGGTCGATTCTTTTTGTTTGAATAAGAGGCTTCCTTTAGAGGATAAAAGTTGATCTCAAT 3252416
Query 71610 AATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATC 71666
|||||| || | ||||| |||| ||||| || || || ||| | ||||||
Sbjct 3252417 AATTTTGTTTAAATTTCGTGTGACCG---CTTTGGTAACTTCTTTGAGTCTTGCAAAATC 3252473
Query 71667 AAATCTCC---CATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGC 71723
|||| | | || | ||||| |||||||| | ||| || ||||||||||| ||
Sbjct 3252474 AAATTTTTGTTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGCAAGATTACAAACAGC 3252533
Query 71724 TACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGT 71783
|| |||| || | ||||| | |||||||||||| ||||| ||||||||||||
Sbjct 3252534 AACTTCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATTTGAACACTTGATGGT 3252593
Query 71784 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGT 71843
||| | ||||| ||||| ||||| ||||| ||| |||||||| ||| |||||
Sbjct 3252594 TCCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATAAAGCATATACGGAAC 3252653
Query 71844 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATT 71903
||||||||| ||||| | || || || |||| ||| | ||||||| |||||| |
Sbjct 3252654 ACCAGTTTCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCGAGCTTTTATTTGCTG 3252713
Query 71904 CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAAG 71962
|||||||| |||||| ||| |||| ||| || | | | ||| || ||||| ||
Sbjct 3252714 ATTGTATCTTTTTTCTTCTTCATATTTAACATA-AAGCTTATTGAATTCATCTCCATAAA 3252772
Query 71963 CATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTA 72022
| | | || |||||||||| | |||||||| | |||| | |||| | || |
Sbjct 3252773 CTTCGAATAGACCAGGACATTTGTGTGGACACATAAGACTCCACATTTCATCTTTTTTAA 3252832
Query 72023 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCT 72082
|||| | |||||| |||| ||| | ||||||||||| ||| | ||||| | ||| ||
Sbjct 3252833 CTCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAATCTCGAGCTCTCATCT 3252892
Query 72083 CCTCGTTTCCTGTATTCTTT-TTAAG-ATCGAGGAACGCCATAATATCAGAATGCCACGG 72140
| || || || || || ||| ||||| || ||||| | | | ||||| |||||| ||
Sbjct 3252893 CTTCTTTACCAGTGTTTTTTCTTAAGCAT--AGGAAATCAAAGACATCAGCATGCCAAGG 3252950
Query 72141 TTCCAAGTATATGGCCATAA-CTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 72199
|| | || || || |||| |||| || ||||| || || || | | || | ||
Sbjct 3252951 CTCAATATAAATAGC-ATAAGCTCCTGGTCGTTTA---CCCCCTTGGTTGACATAACGAG 3253006
Query 72200 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGG 72259
| | | |||| | | | ||| ||| || | | ||||| || |||||| |||||
Sbjct 3253007 CAGATTCATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGAAACCATTTGTCCCTC 3253066
Query 72260 AGATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCAT 72317
||| | |||| | || |||||| || ||||| |||| ||||| || ||
Sbjct 3253067 TGATTCGGGTTCCTTTCGCTCGAATACAATGAACATTGA--GACCAATTCCACCAGCATA 3253124
Query 72318 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 72377
|||||| || || || ||| || ||||| | || || || |||||||| ||| |
Sbjct 3253125 TTTAGAAATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTCAATACTATCTTCCCT 3253184
Query 72378 CAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGG 72436
||| | ||| |||||||| ||||| | || | ||| || || |||||||| | ||
Sbjct 3253185 CATTGATAAA-AGAAAACAACTAGATAGCTGAGGTCGAGGTGTACCAGCATTAAAAAGGG 3253243
Query 72437 TAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATT 72496
|||||||||| || ||||||||||||| ||||| || | ||| |||| | |||||||
Sbjct 3253244 TAGGAGAAGCATGTGTAAACCATTTTTGAGACATTAATTCGTAGGTCTGTAAGGCTGATT 3253303
Query 72497 CTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAA 72556
| ||||| || ||| ||||| || || || | ||||| |||||| || || |||||||
Sbjct 3253304 CAATATCAGATCCATGAATTCCAACAGCAACTCTCATTAGCATATGTTGCGGCCTTTCAA 3253363
Query 72557 CGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 72614
| | || ||| ||||| | | ||| ||| ||||||| ||||| |||||||||||
Sbjct 3253364 CTACTTTACCATTGATTTTAAGAAGGTATGATCTTTCCAAGGTTTTGAAACCAAAATA 3253421
>seq468
Length=1118636
Score = 253 bits (280), Expect = 3e-62
Identities = 533/789 (68%), Gaps = 23/789 (3%)
Strand=Plus/Plus
Query 41882 AATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTC 41941
|||||| | |||||| ||||| | || || || ||| |||||||| |||
Sbjct 1106096 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 1106155
Query 41942 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 42001
|||||||| || |||||| | ||| | || | ||||| || || || || ||
Sbjct 1106156 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 1106215
Query 42002 TCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 42059
||| | || |||| | ||| |||||||||| | | | || |||||| |
Sbjct 1106216 TCTCGCACTATT--TCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATA 1106273
Query 42060 TCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACG 42119
|||||| || ||||| || || | || ||||||| | || | |||||| || || |
Sbjct 1106274 ACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAG 1106333
Query 42120 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAA 42179
| | || ||||| ||||||||||||||||||||||| |||| || || || || || |
Sbjct 1106334 TTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGA 1106393
Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 42239
| ||||| ||||| || ||||||||||| | ||| || || || | |||| ||
Sbjct 1106394 AAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAG--ACTG--AT 1106449
Query 42240 GTAT-------CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292
| || ||| ||| ||||| || ||||| | ||||| || | |||||
Sbjct 1106450 GGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCA 1106509
Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352
|| || || || ||| | | | | | ||| | | || || || |||| ||
Sbjct 1106510 ATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGG 1106569
Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412
|| ||||| || || || | || ||||| || || ||||| || || ||||||| ||
Sbjct 1106570 CTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCT 1106629
Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472
||||||| ||| | || | ||||| ||||||||||||||| || || || |||||
Sbjct 1106630 TCGGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCT 1106689
Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCCGGTGTTAA- 42528
||| | || || ||||| |||| | ||||||| || ||| || |||||
Sbjct 1106690 GAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATC----GTTAAG 1106745
Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588
||| ||| ||| | | |||| ||||| || || ||||| || ||||| || || ||
Sbjct 1106746 CTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGC 1106805
Query 42589 TTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648
||| || || |||||||| | ||| |||||| |||| | ||| ||||| | |||||| |
Sbjct 1106806 TTCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACG 1106865
Query 42649 ATTTGGATT 42657
||| |||||
Sbjct 1106866 ATTAGGATT 1106874
>seq453
Length=2394413
Score = 253 bits (280), Expect = 3e-62
Identities = 533/789 (68%), Gaps = 23/789 (3%)
Strand=Plus/Plus
Query 41882 AATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTC 41941
|||||| | |||||| ||||| | || || || ||| |||||||| |||
Sbjct 11548 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 11607
Query 41942 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 42001
|||||||| || |||||| | ||| | || | ||||| || || || || ||
Sbjct 11608 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 11667
Query 42002 TCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 42059
||| | || |||| | ||| |||||||||| | | | || |||||| |
Sbjct 11668 TCTCGCACTATT--TCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATA 11725
Query 42060 TCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACG 42119
|||||| || ||||| || || | || ||||||| | || | |||||| || || |
Sbjct 11726 ACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAG 11785
Query 42120 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAA 42179
| | || ||||| ||||||||||||||||||||||| |||| || || || || || |
Sbjct 11786 TTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGA 11845
Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 42239
| ||||| ||||| || ||||||||||| | ||| || || || | |||| ||
Sbjct 11846 AAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAG--ACTG--AT 11901
Query 42240 GTAT-------CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292
| || ||| ||| ||||| || ||||| | ||||| || | |||||
Sbjct 11902 GGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCA 11961
Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352
|| || || || ||| | | | | | ||| | | || || || |||| ||
Sbjct 11962 ATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGG 12021
Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412
|| ||||| || || || | || ||||| || || ||||| || || ||||||| ||
Sbjct 12022 CTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCT 12081
Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472
||||||| ||| | || | ||||| ||||||||||||||| || || || |||||
Sbjct 12082 TCGGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCT 12141
Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCCGGTGTTAA- 42528
||| | || || ||||| |||| | ||||||| || ||| || |||||
Sbjct 12142 GAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATC----GTTAAG 12197
Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588
||| ||| ||| | | |||| ||||| || || ||||| || ||||| || || ||
Sbjct 12198 CTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGC 12257
Query 42589 TTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648
||| || || |||||||| | ||| |||||| |||| | ||| ||||| | |||||| |
Sbjct 12258 TTCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACG 12317
Query 42649 ATTTGGATT 42657
||| |||||
Sbjct 12318 ATTAGGATT 12326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671133822497160
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