Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq444 122 9e-23 seq442 84.2 2e-11 >seq444 Length=5217058 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 ||||| || || |||| |||||||||||||| || || ||||| || | || | | Sbjct 3541813 CGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCG 3541872 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || ||||| ||||||||||| |||||| |||||| || || || || || ||||||||| Sbjct 3541873 TCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTG 3541932 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||||| ||| | | ||| | || || | ||||| || |||| || | Sbjct 3541933 TCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATG 3541992 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || || | ||||||||||| |||||||| Sbjct 3541993 GTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 143028 || || || || |||| ||||| |||||||| |||||||||||||||| || | || | Sbjct 3542389 CGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGTCCA 3542448 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||| || ||||||||||| |||||| ||| || |||||||| || || ||||| || Sbjct 3542449 -TCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCCTT 3542507 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| || || ||| | | ||| | ||||||| ||||| || |||| || | Sbjct 3542508 GTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTGAT 3542567 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || || | || || ||||| |||||||| Sbjct 3542568 GGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 || || |||||||| | || |||||||| || |||||||| || | || |||| Sbjct 3541585 CGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGT--TCGAC 3541642 Query 143030 --TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 143087 || || || ||||||||||| |||| ||||| || ||||| || || || ||||| | Sbjct 3541643 CATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCT 3541702 Query 143088 TGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCA 143147 |||| ||||| || | | ||| | ||||| | ||||| ||||| | || | Sbjct 3541703 TGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGA 3541762 Query 143148 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || || || | ||||| ||||| ||||||||| Sbjct 3541763 TGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCATA 3541800 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 142995 CTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAG 143053 ||||||| || || ||||| | ||| | || | |||||||||||||| ||||| || Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCA-TCTTCGAGTTGTTTTCCAGCGAAG 3542244 Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113 |||| |||||| || ||||| || || ||||| ||||| ||||| || | | | Sbjct 3542245 ATCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTT 3542304 Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173 || | || || | ||||| ||||| | ||| | || || || || | ||||| ||| Sbjct 3542305 TCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACG 3542364 Query 143174 AATATTTGCATA 143185 || ||||||||| Sbjct 3542365 AAAATTTGCATA 3542376 >seq442 Length=7801961 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 156179 CGAAAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCC 156238 || || ||||||||||| || || || || ||| ||| || || | |||| ||| | | Sbjct 3251638 CGTAAGTAGTACATGCCTGTCTTAAGCCCAAGCTCCCAGCCATAGAAATGCATCGAGGTC 3251697 Query 156239 ATTTTAGGCAAAGTAGGGTTTGCCATGTACACGTTGAACGATTGACTTTGATCGATAAAT 156298 ||||||| | || ||| || | | | | || || |||||||||||||| ||||| Sbjct 3251698 ATTTTAGCAACAGAAGGTCTTTCAAAATGAATATTTAAAGATTGACTTTGATCAATAAAA 3251757 Query 156299 GCTCCCCTGTCTGCTGCCATTTCAATCATATATTTT 156334 ||||| | || || |||||||| | |||| |||| Sbjct 3251758 GCTCCACGTTCAGCAGCCATTTCCAGAATATTTTTT 3251793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507010337547120