Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq444 122 9e-23
seq442 84.2 2e-11
>seq444
Length=5217058
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029
||||| || || |||| |||||||||||||| || || ||||| || | || | |
Sbjct 3541813 CGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCG 3541872
Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089
|| ||||| ||||||||||| |||||| |||||| || || || || || |||||||||
Sbjct 3541873 TCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTG 3541932
Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149
|| ||||| ||| | | ||| | || || | ||||| || |||| || |
Sbjct 3541933 TCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATG 3541992
Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||||| || || | ||||||||||| ||||||||
Sbjct 3541993 GTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027
Score = 122 bits (134), Expect = 9e-23
Identities = 158/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 143028
|| || || || |||| ||||| |||||||| |||||||||||||||| || | || |
Sbjct 3542389 CGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGTCCA 3542448
Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088
||||| || ||||||||||| |||||| ||| || |||||||| || || ||||| ||
Sbjct 3542449 -TCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCCTT 3542507
Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148
||| || || ||| | | ||| | ||||||| ||||| || |||| || |
Sbjct 3542508 GTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTGAT 3542567
Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| || || || | || || ||||| ||||||||
Sbjct 3542568 GGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029
|| || |||||||| | || |||||||| || |||||||| || | || ||||
Sbjct 3541585 CGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGT--TCGAC 3541642
Query 143030 --TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 143087
|| || || ||||||||||| |||| ||||| || ||||| || || || ||||| |
Sbjct 3541643 CATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCT 3541702
Query 143088 TGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCA 143147
|||| ||||| || | | ||| | ||||| | ||||| ||||| | || |
Sbjct 3541703 TGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGA 3541762
Query 143148 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| || || || | ||||| ||||| |||||||||
Sbjct 3541763 TGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCATA 3541800
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 142995 CTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAG 143053
||||||| || || ||||| | ||| | || | |||||||||||||| ||||| ||
Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCA-TCTTCGAGTTGTTTTCCAGCGAAG 3542244
Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113
|||| |||||| || ||||| || || ||||| ||||| ||||| || | | |
Sbjct 3542245 ATCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTT 3542304
Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173
|| | || || | ||||| ||||| | ||| | || || || || | ||||| |||
Sbjct 3542305 TCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACG 3542364
Query 143174 AATATTTGCATA 143185
|| |||||||||
Sbjct 3542365 AAAATTTGCATA 3542376
>seq442
Length=7801961
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 156179 CGAAAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCC 156238
|| || ||||||||||| || || || || ||| ||| || || | |||| ||| | |
Sbjct 3251638 CGTAAGTAGTACATGCCTGTCTTAAGCCCAAGCTCCCAGCCATAGAAATGCATCGAGGTC 3251697
Query 156239 ATTTTAGGCAAAGTAGGGTTTGCCATGTACACGTTGAACGATTGACTTTGATCGATAAAT 156298
||||||| | || ||| || | | | | || || |||||||||||||| |||||
Sbjct 3251698 ATTTTAGCAACAGAAGGTCTTTCAAAATGAATATTTAAAGATTGACTTTGATCAATAAAA 3251757
Query 156299 GCTCCCCTGTCTGCTGCCATTTCAATCATATATTTT 156334
||||| | || || |||||||| | |||| ||||
Sbjct 3251758 GCTCCACGTTCAGCAGCCATTTCCAGAATATTTTTT 3251793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507010337547120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |