Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq444 143 2e-29 >seq444 Length=5217058 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || |||||||| || |||||||| || || ||||| || ||| | | |||| Sbjct 3541816 AAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCGTCC 3541875 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| |||||| | ||||||||||||||||| ||| || ||||||||||| Sbjct 3541876 TCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTGTCT 3541935 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| || || |||| || ||||| | ||| || || | |||||||| Sbjct 3541936 TGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATGGTC 3541995 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||||||||| ||||||||||| Sbjct 3541996 TTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027 Score = 136 bits (150), Expect = 3e-27 Identities = 177/241 (73%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | || ||| || || |||||||| || |||||||| |||||||||||||| Sbjct 3542377 CCACCACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTC 3542436 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||||| |||||| | |||||||| ||||| ||| ||| Sbjct 3542437 AGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGG 3542496 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTAC 15315 || ||||| ||||| || ||| || ||| |||| || || || | || ||| || Sbjct 3542497 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTC-CGATGGTTCAAC 3542555 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAA 15375 || | ||| |||||||| || || ||||| || || ||||||||||| ||||||| | Sbjct 3542556 CTCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT-GATGAAAATCA 3542614 Query 15376 A 15376 | Sbjct 3542615 A 3542615 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | || ||| |||||||| | || || ||||| || |||||||| || Sbjct 3541573 CCACCACGAAGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAA 3541632 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| | || || | ||||| |||||| | || | ||| ||||| || ||| Sbjct 3541633 AGGGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGG 3541692 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||| ||| ||| |||| ||||| ||| | ||| || Sbjct 3541693 ATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACT 3541752 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||||||||| || || ||||| || |||||||||||| Sbjct 3541753 TCCAAGGTGATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCATA 3541800 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | |||||| |||||| | |||||||||||||||||| ||||| ||||| ||| Sbjct 3542221 TCTTCGAGTTGTTTTCCAGCGAAGATCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTG 3542280 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||||| ||| || |||| ||||||||| | ||| || || || |||||| Sbjct 3542281 TCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATG 3542340 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || || ||||| || |||||||||||| Sbjct 3542341 GTTTTTCCAGTGAGGGTTTTAACGAAAATTTGCATA 3542376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362176370588181