Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq444 143 2e-29
>seq444
Length=5217058
Score = 143 bits (158), Expect = 2e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || || |||||||| || |||||||| || || ||||| || ||| | | ||||
Sbjct 3541816 AAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCGTCC 3541875
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| | ||||| |||||| | ||||||||||||||||| ||| || |||||||||||
Sbjct 3541876 TCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTGTCT 3541935
Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331
|||||| || || |||| || ||||| | ||| || || | ||||||||
Sbjct 3541936 TGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATGGTC 3541995
Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||| || ||||||||||| |||||||||||
Sbjct 3541996 TTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027
Score = 136 bits (150), Expect = 3e-27
Identities = 177/241 (73%), Gaps = 3/241 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | || ||| || || |||||||| || |||||||| ||||||||||||||
Sbjct 3542377 CCACCACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTC 3542436
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | ||||| | ||||| |||||| | |||||||| ||||| ||| |||
Sbjct 3542437 AGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGG 3542496
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTAC 15315
|| ||||| ||||| || ||| || ||| |||| || || || | || ||| ||
Sbjct 3542497 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTC-CGATGGTTCAAC 3542555
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAA 15375
|| | ||| |||||||| || || ||||| || || ||||||||||| ||||||| |
Sbjct 3542556 CTCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT-GATGAAAATCA 3542614
Query 15376 A 15376
|
Sbjct 3542615 A 3542615
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | || ||| |||||||| | || || ||||| || |||||||| ||
Sbjct 3541573 CCACCACGAAGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAA 3541632
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| ||| | || || | ||||| |||||| | || | ||| ||||| || |||
Sbjct 3541633 AGGGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGG 3541692
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| ||||| ||||| ||| ||| |||| ||||| ||| | ||| ||
Sbjct 3541693 ATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACT 3541752
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| ||||| ||||||||||| || || ||||| || ||||||||||||
Sbjct 3541753 TCCAAGGTGATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCATA 3541800
Score = 123 bits (136), Expect = 2e-23
Identities = 121/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
||||| | |||||| |||||| | |||||||||||||||||| ||||| ||||| |||
Sbjct 3542221 TCTTCGAGTTGTTTTCCAGCGAAGATCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTG 3542280
Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328
|| ||||| ||| || |||| ||||||||| | ||| || || || ||||||
Sbjct 3542281 TCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATG 3542340
Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
||||| || || || ||||| || ||||||||||||
Sbjct 3542341 GTTTTTCCAGTGAGGGTTTTAACGAAAATTTGCATA 3542376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362176370588181
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |