Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq444 95.1 9e-15 >seq444 Length=5217058 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| || || || |||||||||||||||||||| | | ||| | || Sbjct 3541816 AAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCGTCC 3541875 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | ||||| || || || ||||| ||||| ||||| | || | ||||||||| ||| Sbjct 3541876 TCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTGTCT 3541935 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||| ||| || | ||| |||||| | || || || || | ||||| || Sbjct 3541936 TGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATGGTC 3541995 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || | ||| || || || |||||||| Sbjct 3541996 TTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 ||||||| ||||||||||| |||| ||| |||| || | ||||||||| || || | Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGA 3542245 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 |||| ||||| ||||| | || | |||||| || || ||||| ||||| | Sbjct 3542246 TCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTT 3542305 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 ||| ||||| | || || || || | ||||| ||||| || || | || || || | Sbjct 3542306 CAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGA 3542365 Query 44112 ATATTTGCAT 44121 | |||||||| Sbjct 3542366 AAATTTGCAT 3542375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354774828410868