Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq468 246 3e-60
seq453 246 3e-60
seq444 82.4 7e-11
>seq468
Length=1118636
Score = 246 bits (272), Expect = 3e-60
Identities = 523/773 (68%), Gaps = 6/773 (1%)
Strand=Plus/Plus
Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021
||| ||||||| | | ||||||||| ||||||||||| ||||| || ||| | |
Sbjct 1106090 CACTCTAATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTG 1106149
Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081
|||||||||||| | || |||| || || |||||||| || | || || ||
Sbjct 1106150 TTGTTCATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCC 1106209
Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAG-ATGCTT 13140
|| || || ||||| ||| || | || || | | | ||| | | || ||
Sbjct 1106210 ACAGCATCTCGCACTATTTCTTGAATAATTTTTTC-ACTCGGTCTTTTAACAACATATTT 1106268
Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200
||| | || ||| ||||||||||| || ||||||||||||| | || || ||||| ||
Sbjct 1106269 AAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGA 1106328
Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260
|| |||| ||| ||||| || || || ||||||| |||||| ||||| || || || ||
Sbjct 1106329 GAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCC 1106388
Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACG-TACTAT 13319
|| ||||| || |||||||| |||||| || ||||| ||||| || | | |||
Sbjct 1106389 TGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACT-G 1106447
Query 13320 TTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTT 13379
| | | | |||| ||| | ||||| | || ||||| ||| || | | |||
Sbjct 1106448 ATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTT 1106507
Query 13380 CTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATA 13439
| || || || || | | | | | | | || || ||||| ||||||| ||
Sbjct 1106508 CAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTA 1106567
Query 13440 AGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAG 13499
||| ||||| || || || | ||| || ||||| ||||| |||||||||||||||| ||
Sbjct 1106568 GGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAG 1106627
Query 13500 CCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558
| || | | ||| | || || | ||||||||| ||||| ||||| || || || |||
Sbjct 1106628 CTTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAATACCG 1106686
Query 13559 TCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAAC 13618
|| |||| || || || | | | | ||||| | ||| | || | |
Sbjct 1106687 TCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGC 1106746
Query 13619 TTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCA 13678
|| ||| || | |||||| ||||| || ||||| ||||| ||||| || || ||
Sbjct 1106747 TTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCT 1106806
Query 13679 ACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731
|||| ||||||||||| ||| ||||| ||| |||| || ||||||||
Sbjct 1106807 TCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAAC 1106859
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 12858 TTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATAT 12917
||||||||||||| | ||| ||||| || |||||||||||||| || || || ||||| |
Sbjct 1105889 TTTTTTGATATTCACCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 1105948
Query 12918 TTTCCATAAAATCGAAAGGATT 12939
||||||||||| || |||||
Sbjct 1105949 GATCCATAAAATCAAATGGATT 1105970
>seq453
Length=2394413
Score = 246 bits (272), Expect = 3e-60
Identities = 523/773 (68%), Gaps = 6/773 (1%)
Strand=Plus/Plus
Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021
||| ||||||| | | ||||||||| ||||||||||| ||||| || ||| | |
Sbjct 11542 CACTCTAATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTG 11601
Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081
|||||||||||| | || |||| || || |||||||| || | || || ||
Sbjct 11602 TTGTTCATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCC 11661
Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAG-ATGCTT 13140
|| || || ||||| ||| || | || || | | | ||| | | || ||
Sbjct 11662 ACAGCATCTCGCACTATTTCTTGAATAATTTTTTC-ACTCGGTCTTTTAACAACATATTT 11720
Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200
||| | || ||| ||||||||||| || ||||||||||||| | || || ||||| ||
Sbjct 11721 AAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGA 11780
Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260
|| |||| ||| ||||| || || || ||||||| |||||| ||||| || || || ||
Sbjct 11781 GAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCC 11840
Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACG-TACTAT 13319
|| ||||| || |||||||| |||||| || ||||| ||||| || | | |||
Sbjct 11841 TGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACT-G 11899
Query 13320 TTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTT 13379
| | | | |||| ||| | ||||| | || ||||| ||| || | | |||
Sbjct 11900 ATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTT 11959
Query 13380 CTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATA 13439
| || || || || | | | | | | | || || ||||| ||||||| ||
Sbjct 11960 CAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTA 12019
Query 13440 AGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAG 13499
||| ||||| || || || | ||| || ||||| ||||| |||||||||||||||| ||
Sbjct 12020 GGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAG 12079
Query 13500 CCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558
| || | | ||| | || || | ||||||||| ||||| ||||| || || || |||
Sbjct 12080 CTTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAATACCG 12138
Query 13559 TCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAAC 13618
|| |||| || || || | | | | ||||| | ||| | || | |
Sbjct 12139 TCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGC 12198
Query 13619 TTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCA 13678
|| ||| || | |||||| ||||| || ||||| ||||| ||||| || || ||
Sbjct 12199 TTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCT 12258
Query 13679 ACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731
|||| ||||||||||| ||| ||||| ||| |||| || ||||||||
Sbjct 12259 TCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAAC 12311
Score = 89.7 bits (98), Expect = 4e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 12858 TTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATAT 12917
||||||||||||||| ||| ||||| || |||||||||||||| || || || ||||| |
Sbjct 11341 TTTTTTGATATTCGCCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 11400
Query 12918 TTTCCATAAAATCGAAAGGATT 12939
||||||||||| || |||||
Sbjct 11401 GATCCATAAAATCAAATGGATT 11422
>seq444
Length=5217058
Score = 82.4 bits (90), Expect = 7e-11
Identities = 139/195 (71%), Gaps = 10/195 (5%)
Strand=Plus/Minus
Query 10715 CTAGTCTTTCAAACACTATTTGAGCTATTCTATCCCCCCTTTTAATGT---AATGTGGAG 10771
||| | ||||| | | || ||||| |||||||| || |||||| | ||| ||
Sbjct 5155822 CTATTTTTTCACAAATTAGCTGAGCAATTCTATCTCCTTTTTTAACTTGGAAATCTG--- 5155766
Query 10772 AATTACCGTTATTGATAAATATTACACCTATAACACCCCTGTAGTCTCCGTCTATAACAC 10831
||| ||| ||||| || || || || | | ||| ||||| || |||| |||||||
Sbjct 5155765 AATCTCCGAAATTGAACAAGATAACTCCAACATTACCTCTGTAATCAGCGTCAATAACAC 5155706
Query 10832 CTCCGCCTATATCTATGCTATTATTTAAC-GATAATCCAGATC-TGGATGCTATTCTTCC 10889
|| | || | ||| || | | | ||||| | ||||||||||| |||| || ||||| ||
Sbjct 5155705 CTGCTCCAACATCAAT-CGAATGTTTAAGAGCTAATCCAGATCGTGGA-GCAATTCTACC 5155648
Query 10890 ATAACATTCATCTGG 10904
|||||| |||||||
Sbjct 5155647 ATAACAACCATCTGG 5155633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430979033084682
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |