Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq468 246 3e-60 seq453 246 3e-60 seq444 82.4 7e-11 >seq468 Length=1118636 Score = 246 bits (272), Expect = 3e-60 Identities = 523/773 (68%), Gaps = 6/773 (1%) Strand=Plus/Plus Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021 ||| ||||||| | | ||||||||| ||||||||||| ||||| || ||| | | Sbjct 1106090 CACTCTAATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTG 1106149 Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081 |||||||||||| | || |||| || || |||||||| || | || || || Sbjct 1106150 TTGTTCATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCC 1106209 Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAG-ATGCTT 13140 || || || ||||| ||| || | || || | | | ||| | | || || Sbjct 1106210 ACAGCATCTCGCACTATTTCTTGAATAATTTTTTC-ACTCGGTCTTTTAACAACATATTT 1106268 Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200 ||| | || ||| ||||||||||| || ||||||||||||| | || || ||||| || Sbjct 1106269 AAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGA 1106328 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260 || |||| ||| ||||| || || || ||||||| |||||| ||||| || || || || Sbjct 1106329 GAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCC 1106388 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACG-TACTAT 13319 || ||||| || |||||||| |||||| || ||||| ||||| || | | ||| Sbjct 1106389 TGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACT-G 1106447 Query 13320 TTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTT 13379 | | | | |||| ||| | ||||| | || ||||| ||| || | | ||| Sbjct 1106448 ATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTT 1106507 Query 13380 CTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATA 13439 | || || || || | | | | | | | || || ||||| ||||||| || Sbjct 1106508 CAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTA 1106567 Query 13440 AGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAG 13499 ||| ||||| || || || | ||| || ||||| ||||| |||||||||||||||| || Sbjct 1106568 GGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAG 1106627 Query 13500 CCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558 | || | | ||| | || || | ||||||||| ||||| ||||| || || || ||| Sbjct 1106628 CTTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAATACCG 1106686 Query 13559 TCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAAC 13618 || |||| || || || | | | | ||||| | ||| | || | | Sbjct 1106687 TCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGC 1106746 Query 13619 TTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCA 13678 || ||| || | |||||| ||||| || ||||| ||||| ||||| || || || Sbjct 1106747 TTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCT 1106806 Query 13679 ACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731 |||| ||||||||||| ||| ||||| ||| |||| || |||||||| Sbjct 1106807 TCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAAC 1106859 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 12858 TTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATAT 12917 ||||||||||||| | ||| ||||| || |||||||||||||| || || || ||||| | Sbjct 1105889 TTTTTTGATATTCACCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 1105948 Query 12918 TTTCCATAAAATCGAAAGGATT 12939 ||||||||||| || ||||| Sbjct 1105949 GATCCATAAAATCAAATGGATT 1105970 >seq453 Length=2394413 Score = 246 bits (272), Expect = 3e-60 Identities = 523/773 (68%), Gaps = 6/773 (1%) Strand=Plus/Plus Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021 ||| ||||||| | | ||||||||| ||||||||||| ||||| || ||| | | Sbjct 11542 CACTCTAATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTG 11601 Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081 |||||||||||| | || |||| || || |||||||| || | || || || Sbjct 11602 TTGTTCATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCC 11661 Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAG-ATGCTT 13140 || || || ||||| ||| || | || || | | | ||| | | || || Sbjct 11662 ACAGCATCTCGCACTATTTCTTGAATAATTTTTTC-ACTCGGTCTTTTAACAACATATTT 11720 Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200 ||| | || ||| ||||||||||| || ||||||||||||| | || || ||||| || Sbjct 11721 AAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGA 11780 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260 || |||| ||| ||||| || || || ||||||| |||||| ||||| || || || || Sbjct 11781 GAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCC 11840 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACG-TACTAT 13319 || ||||| || |||||||| |||||| || ||||| ||||| || | | ||| Sbjct 11841 TGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACT-G 11899 Query 13320 TTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTT 13379 | | | | |||| ||| | ||||| | || ||||| ||| || | | ||| Sbjct 11900 ATGGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTT 11959 Query 13380 CTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATA 13439 | || || || || | | | | | | | || || ||||| ||||||| || Sbjct 11960 CAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTA 12019 Query 13440 AGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAG 13499 ||| ||||| || || || | ||| || ||||| ||||| |||||||||||||||| || Sbjct 12020 GGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAG 12079 Query 13500 CCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558 | || | | ||| | || || | ||||||||| ||||| ||||| || || || ||| Sbjct 12080 CTTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAATACCG 12138 Query 13559 TCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAAC 13618 || |||| || || || | | | | ||||| | ||| | || | | Sbjct 12139 TCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGC 12198 Query 13619 TTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCA 13678 || ||| || | |||||| ||||| || ||||| ||||| ||||| || || || Sbjct 12199 TTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCT 12258 Query 13679 ACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731 |||| ||||||||||| ||| ||||| ||| |||| || |||||||| Sbjct 12259 TCAGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAAC 12311 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 12858 TTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATAT 12917 ||||||||||||||| ||| ||||| || |||||||||||||| || || || ||||| | Sbjct 11341 TTTTTTGATATTCGCCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 11400 Query 12918 TTTCCATAAAATCGAAAGGATT 12939 ||||||||||| || ||||| Sbjct 11401 GATCCATAAAATCAAATGGATT 11422 >seq444 Length=5217058 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/195 (71%), Gaps = 10/195 (5%) Strand=Plus/Minus Query 10715 CTAGTCTTTCAAACACTATTTGAGCTATTCTATCCCCCCTTTTAATGT---AATGTGGAG 10771 ||| | ||||| | | || ||||| |||||||| || |||||| | ||| || Sbjct 5155822 CTATTTTTTCACAAATTAGCTGAGCAATTCTATCTCCTTTTTTAACTTGGAAATCTG--- 5155766 Query 10772 AATTACCGTTATTGATAAATATTACACCTATAACACCCCTGTAGTCTCCGTCTATAACAC 10831 ||| ||| ||||| || || || || | | ||| ||||| || |||| ||||||| Sbjct 5155765 AATCTCCGAAATTGAACAAGATAACTCCAACATTACCTCTGTAATCAGCGTCAATAACAC 5155706 Query 10832 CTCCGCCTATATCTATGCTATTATTTAAC-GATAATCCAGATC-TGGATGCTATTCTTCC 10889 || | || | ||| || | | | ||||| | ||||||||||| |||| || ||||| || Sbjct 5155705 CTGCTCCAACATCAAT-CGAATGTTTAAGAGCTAATCCAGATCGTGGA-GCAATTCTACC 5155648 Query 10890 ATAACATTCATCTGG 10904 |||||| ||||||| Sbjct 5155647 ATAACAACCATCTGG 5155633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430979033084682