Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq444 168 2e-36
seq476 167 5e-36
seq453 158 3e-33
seq448 154 3e-32
seq468 150 4e-31
>seq444
Length=5217058
Score = 168 bits (186), Expect = 2e-36
Identities = 156/198 (79%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||||||||| ||||||||||| ||| ||||| | |||||| || || ||||| |||
Sbjct 3541831 GTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCGTCCTCGAGCTGTTTACCA 3541890
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | ||||| ||||| || || |||||||| || || || || |||||
Sbjct 3541891 GCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTGTCTTGGATTTTGGCTTTC 3541950
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| ||||| | ||||| |||||| ||||| |||||||| |||||||||||||| |||
Sbjct 3541951 ACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATGGTCTTACCAGTAAGAGTT 3542010
Query 104543 TTTACAAATATCTGCATT 104560
||||| || || ||||||
Sbjct 3542011 TTTACGAAAATTTGCATT 3542028
Score = 167 bits (184), Expect = 5e-36
Identities = 163/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409
||||| |||||| || |||||||||||||| || |||||||| || |||| ||| || ||
Sbjct 3541590 TACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCATCCTC 3541649
Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469
|| ||||| ||||| || || || | |||||||||||| || |||||||| || || ||
Sbjct 3541650 AAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCTTG 3541709
Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529
|| || || || |||||||| | ||| ||| |||||| || || | || || || ||
Sbjct 3541710 GATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATGGTTTT 3541769
Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||||| || ||||| || || || |||||
Sbjct 3541770 ACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799
Score = 127 bits (140), Expect = 5e-24
Identities = 142/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429
|||| || |||||||| ||||||| || | || ||||| |||||||||||||| || |
Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGA 3542245
Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489
| | | ||||| || || || || ||||| || ||||| || || || || || ||||
Sbjct 3542246 TCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTT 3542305
Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549
| | ||||||| |||||| || || | ||||| || || ||||| || ||||| || |
Sbjct 3542306 CAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGA 3542365
Query 104550 ATATCTGCAT 104559
| || |||||
Sbjct 3542366 AAATTTGCAT 3542375
Score = 98.7 bits (108), Expect = 2e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 65722 CTATTTTTTCAAATATGATTTGAGCTACTCTATCGCCTTTACATATATTAAACTCCTCCT 65781
||||||||||| | || | ||||| | |||||| ||||| | | || || |
Sbjct 5155822 CTATTTTTTCACAAATTAGCTGAGCAATTCTATCTCCTTTTTTAACTTGGAAATCTGAAT 5155763
Query 65782 TACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATCTATAACACCAG 65841
|||||||| || | | | ||||||||||||||| || || | || |||||||| |
Sbjct 5155762 CTCCGAAATTGAACAAGATAACTCCAACATTACCTCTGTAATCAGCGTCAATAACACCTG 5155703
Query 65842 CACCTACATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGCTATTCTACCATAA 65900
| || ||||| || | | ||| |||||||||||||| ||||| ||||||||||||
Sbjct 5155702 CTCCAACATCAATCGAATGTTTAAGAGCTAATCCAGATCGTGGAGCAATTCTACCATAA 5155644
>seq476
Length=723144
Score = 167 bits (184), Expect = 5e-36
Identities = 322/467 (69%), Gaps = 6/467 (1%)
Strand=Plus/Minus
Query 238425 ATAAGACGTGAACTAGCTGATAATTTTTGCTATTATAATAAAAGATATGATTCTATAGAA 238484
|| ||||||||| | ||||| || || |||| ||||||| | |||||||| || ||
Sbjct 1976 ATCAGACGTGAATTGGCTGACAACTTCTGCTTTTATAATCCTAACTATGATTCACTAAAA 1917
Query 238485 TCCACACATTCATGGGCACGAGAAACATTAGAAGCACACGTAAATGATAGAAGAAAATAT 238544
| | |||||| | | |||| | | | || ||| |||| | | |||
Sbjct 1916 GGTGCTCCGGAATGGGCTCAAAAAACTCTTAATGATCATCGAAAAGATAAACGTCCTTAT 1857
Query 238545 ATTTACTCTTTAAAACAGCTCGAGAGA-GCCGAAACTCACGATCCCCTATGGAATTCCGC 238603
| ||| || ||| || | || ||| | |||| || ||||| || |||||| |
Sbjct 1856 GTGTACACTAAGAAAGAGTTTGA-AGACGGTAAAACGCATGATCCTCTGTGGAATGCTTG 1798
Query 238604 CCAGATACAAATGGTAAGACTAGGCAAAA-TGCATAGTTTCTTACGAATGTATTGGGCTA 238662
||||| ||| |||| | | | || ||| | ||| ||| | | |||||||||||||||
Sbjct 1797 TCAGATGCAATTGGTTCG-CGATGCTAAACTTCATGGTTACATGAGAATGTATTGGGCTA 1739
Query 238663 AAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAG-TATTTATCTG 238721
|||||||||||||||||| || |||||| | ||||| || || || | ||| ||| |
Sbjct 1738 AAAAGATACTTGAATGGAGTAAATCTCCCGAAGAAGCACTG-GAAATCGCTATCTATTTA 1680
Query 238722 AACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCA 238781
|| || || | |||||| || ||| ||||| || || | |||||| ||| | |||||
Sbjct 1679 AATGACAATTTCGAACTAGATGGTCGTGATCCAAATGGTTTCGTAGGCTGTCTCTGGTCC 1620
Query 238782 ATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATAC 238841
| | || |||| || | |||| ||| ||| | || ||||||||| | |||||
Sbjct 1619 GTTGGGGGTATACATGACCAAGGATGGGGTGAAAGAGCGATCTTTGGAAAAATACGATAC 1560
Query 238842 ATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGCTTTTAT 238888
|||||||||||||| || | ||||||||| | || |||||||
Sbjct 1559 ATGAATTATGAAGGTTGCAAAAGAAAATTTGACATCAACACTTTTAT 1513
>seq453
Length=2394413
Score = 158 bits (174), Expect = 3e-33
Identities = 309/449 (69%), Gaps = 6/449 (1%)
Strand=Plus/Minus
Query 238428 AGACGTGAACTAGCTGATAATTTTTGCTATTATAATAAAAGATATGATTCTATAGAATCC 238487
||||||||| | ||||| || || |||| |||||| | |||||||| || ||
Sbjct 2274999 AGACGTGAATTGGCTGACAACTTCTGCTTTTATAACCCTAACTATGATTCACTAAAAGGT 2274940
Query 238488 ACACATTCATGGGCACGAGAAACATTAGAAGCACACGTAAATGATAGAAGAAAATATATT 238547
| | |||||| | | |||| | | | || ||| |||| | | ||| |
Sbjct 2274939 GCTCCGGAATGGGCTCAAAAAACTCTTAATGATCATCGAAAAGATAAACGTCCTTATGTG 2274880
Query 238548 TACTCTTTAAAACAGCTCGAGAGA-GCCGAAACTCACGATCCCCTATGGAATTCCGCCCA 238606
||| || |||| || | || ||| | ||||||| ||||| || |||||| | ||
Sbjct 2274879 TACACTAAAAAAGAGTTTGA-AGACGGTAAAACTCATGATCCTCTGTGGAATGCTTGTCA 2274821
Query 238607 GATACAAATGGTAAGACTAGGCAAAA-TGCATAGTTTCTTACGAATGTATTGGGCTAAAA 238665
||| ||| |||| | | | || ||| | ||| ||| | | ||||||||||||||||||
Sbjct 2274820 GATGCAATTGGTTCG-CGATGCTAAACTTCATGGTTACATGAGAATGTATTGGGCTAAAA 2274762
Query 238666 AGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAG-TATTTATCTGAAC 238724
||||||| ||||||| || |||||| | ||||| || || || | ||| ||| | ||
Sbjct 2274761 AGATACTAGAATGGAGTAAATCTCCGGAAGAAGCACTG-GAAATCGCTATCTATTTAAAT 2274703
Query 238725 GATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATA 238784
|| |||| ||| | || ||| ||||| || || | |||||| ||| | ||||| |
Sbjct 2274702 GACAAATTTGAATTAGATGGTCGCGATCCAAATGGTTTCGTAGGCTGTCTCTGGTCCGTT 2274643
Query 238785 TGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATG 238844
| || |||| || | |||| ||| ||| | || ||||||||| | ||||||||
Sbjct 2274642 GGGGGTATACATGACCAAGGATGGGGTGAAAGAGCGATCTTTGGAAAAATACGATACATG 2274583
Query 238845 AATTATGAAGGAACTAAGAAAAAATTTGA 238873
||||||||||| || | |||||||||
Sbjct 2274582 AATTATGAAGGTTGCAAAAGAAAATTTGA 2274554
Score = 150 bits (166), Expect = 4e-31
Identities = 290/424 (68%), Gaps = 9/424 (2%)
Strand=Plus/Minus
Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936
|| ||||| || || |||||| ||| || | || || || | |||||| | |||
Sbjct 12140 GACGGTATTGTAAATGAAAATTTAGCTGAAAGATTTATTCGTGATATCCAGATTACCGAA 12081
Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996
|| |||||||||| || || || || || || || ||| | || || |||||||||||
Sbjct 12080 GCTCGATGTTTTTATGGTTTTCAAATTGCGATTGAGAATGTGCACTCTGAGATGTACAGC 12021
Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT--CTA 269054
||| | ||||| ||||| || |||| || | | | | | ||||| |||
Sbjct 12020 CTACTGATAGACACTTACATCAGTGATCCTGACCAGCGGGA--GTTTCTTTTCAAAGCTA 11963
Query 269055 TGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT----AAAC 269110
| |||| | ||||| |||| |||||||||| | || |||| || |
Sbjct 11962 TTGAAACTGTCCCATGTGTTGCTCAAAAGGCTGAATGGGCAATAAACTGGACTGCAAATC 11903
Query 269111 GATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170
|| | | || | ||||| || |||| ||||| ||| |||||||| || ||
Sbjct 11902 CATCAGTCTCTTTT-GCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTC 11844
Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230
|| || ||||| ||||||||||||||| | || || | ||||| |||||||| ||||||
Sbjct 11843 TCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACT 11784
Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290
|||||||||||| | || | || ||||| ||||| || || || || ||||| |||
Sbjct 11783 TTCTCTAACGAACTTATCTCTCGAGATGAAGGATTACATTGTGATTTTGCCTGTTTGTTA 11724
Query 269291 TTTA 269294
||||
Sbjct 11723 TTTA 11720
>seq448
Length=3678511
Score = 154 bits (170), Expect = 3e-32
Identities = 249/350 (71%), Gaps = 6/350 (2%)
Strand=Plus/Minus
Query 165089 ATTTATACCGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACAT 165148
|||| || ||| | | |||||| ||||||| |||| |||||||||||| ||
Sbjct 3039004 ATTTTCACTGATGATCAAGAATGGTCCTCTTGGAAACAAATGTCCGATCCTGTTTTGCAC 3038945
Query 165149 ATAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTA 165208
|| || || | | |||||| ||||| |||||||| | || || || || | ||||
Sbjct 3038944 ATTGAACTCCGTAAATGGGCTGATATTATGTTGATTTCTCCATTGGATGCTAATACTTTA 3038885
Query 165209 GCGAAGATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAAT 165268
|| || || || ||||| ||| ||||||| ||||| ||||||| | || ||| ||
Sbjct 3038884 GCCAAAATCTCTTCTGGTATTTGTGATAACTTATTAACTTGTATAGCCCGTGCCTGGGAT 3038825
Query 165269 ATTAATAAACCTTTACTTTTCTGTCCAGCTATGAATACACTTATGTGGGAACATCCTATT 165328
| | || |||||| | || |||||| ||||||| ||| | |||||||||||||| |
Sbjct 3038824 CTGCAAAAGCCTTTATTATTTTGTCCATCTATGAACACATTCATGTGGGAACATCCAGTC 3038765
Query 165329 AC-TGAGCAGCATATAGAAACTCTTAAGCATATGGGG-TACA-TAGAAGTTGAGTGTATT 165385
|| | | ||| |||||| ||| || | |||||| |||| | | | ||| | ||
Sbjct 3038764 ACATCTGAAGCTATTAGAAA-GCTTGAG-ACATGGGGTTACACTTTGATTCCAGT-TGTT 3038708
Query 165386 GAGAAAAAGCTAGCTTGTGGTGATATTGGAAAAGGTGCCATGGCAGAAGT 165435
|||||||| |||||||||||||||||| || || ||||| |||||
Sbjct 3038707 TCCAAAAAGCTTGCTTGTGGTGATATTGGACCTGGAGCTATGGCTGAAGT 3038658
>seq468
Length=1118636
Score = 150 bits (166), Expect = 4e-31
Identities = 290/424 (68%), Gaps = 9/424 (2%)
Strand=Plus/Minus
Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936
|| ||||| || || |||||| ||| || | || || || | |||||| | |||
Sbjct 1106688 GACGGTATTGTAAATGAAAATTTAGCTGAAAGATTTATTCGTGATATCCAGATTACCGAA 1106629
Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996
|| |||||||||| || || || || || || || ||| | || || |||||||||||
Sbjct 1106628 GCTCGATGTTTTTATGGTTTTCAAATTGCGATTGAGAATGTGCACTCTGAGATGTACAGC 1106569
Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT--CTA 269054
||| | ||||| ||||| || |||| || | | | | | ||||| |||
Sbjct 1106568 CTACTGATAGACACTTACATCAGTGATCCTGACCAGCGGGA--GTTTCTTTTCAAAGCTA 1106511
Query 269055 TGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT----AAAC 269110
| |||| | ||||| |||| |||||||||| | || |||| || |
Sbjct 1106510 TTGAAACTGTCCCATGTGTTGCTCAAAAGGCTGAATGGGCAATAAACTGGACTGCAAATC 1106451
Query 269111 GATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170
|| | | || | ||||| || |||| ||||| ||| |||||||| || ||
Sbjct 1106450 CATCAGTCTCTTTT-GCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTC 1106392
Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230
|| || ||||| ||||||||||||||| | || || | ||||| |||||||| ||||||
Sbjct 1106391 TCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACT 1106332
Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290
|||||||||||| | || | || ||||| ||||| || || || || ||||| |||
Sbjct 1106331 TTCTCTAACGAACTTATCTCTCGAGATGAAGGATTACATTGTGATTTTGCCTGTTTGTTA 1106272
Query 269291 TTTA 269294
||||
Sbjct 1106271 TTTA 1106268
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151388943780828
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