Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq444 168 2e-36 seq476 167 5e-36 seq453 158 3e-33 seq448 154 3e-32 seq468 150 4e-31 >seq444 Length=5217058 Score = 168 bits (186), Expect = 2e-36 Identities = 156/198 (79%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||||||||| ||| ||||| | |||||| || || ||||| ||| Sbjct 3541831 GTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCGTCCTCGAGCTGTTTACCA 3541890 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||||| ||||| || || |||||||| || || || || ||||| Sbjct 3541891 GCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTGTCTTGGATTTTGGCTTTC 3541950 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||||| |||||| ||||| |||||||| |||||||||||||| ||| Sbjct 3541951 ACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATGGTCTTACCAGTAAGAGTT 3542010 Query 104543 TTTACAAATATCTGCATT 104560 ||||| || || |||||| Sbjct 3542011 TTTACGAAAATTTGCATT 3542028 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| |||||| || |||||||||||||| || |||||||| || |||| ||| || || Sbjct 3541590 TACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCATCCTC 3541649 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || ||||| ||||| || || || | |||||||||||| || |||||||| || || || Sbjct 3541650 AAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCTTG 3541709 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || || || || |||||||| | ||| ||| |||||| || || | || || || || Sbjct 3541710 GATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATGGTTTT 3541769 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || ||||| || || || ||||| Sbjct 3541770 ACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| || |||||||| ||||||| || | || ||||| |||||||||||||| || | Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGA 3542245 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | | ||||| || || || || ||||| || ||||| || || || || || |||| Sbjct 3542246 TCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTT 3542305 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | ||||||| |||||| || || | ||||| || || ||||| || ||||| || | Sbjct 3542306 CAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGA 3542365 Query 104550 ATATCTGCAT 104559 | || ||||| Sbjct 3542366 AAATTTGCAT 3542375 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 65722 CTATTTTTTCAAATATGATTTGAGCTACTCTATCGCCTTTACATATATTAAACTCCTCCT 65781 ||||||||||| | || | ||||| | |||||| ||||| | | || || | Sbjct 5155822 CTATTTTTTCACAAATTAGCTGAGCAATTCTATCTCCTTTTTTAACTTGGAAATCTGAAT 5155763 Query 65782 TACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATCTATAACACCAG 65841 |||||||| || | | | ||||||||||||||| || || | || |||||||| | Sbjct 5155762 CTCCGAAATTGAACAAGATAACTCCAACATTACCTCTGTAATCAGCGTCAATAACACCTG 5155703 Query 65842 CACCTACATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGCTATTCTACCATAA 65900 | || ||||| || | | ||| |||||||||||||| ||||| |||||||||||| Sbjct 5155702 CTCCAACATCAATCGAATGTTTAAGAGCTAATCCAGATCGTGGAGCAATTCTACCATAA 5155644 >seq476 Length=723144 Score = 167 bits (184), Expect = 5e-36 Identities = 322/467 (69%), Gaps = 6/467 (1%) Strand=Plus/Minus Query 238425 ATAAGACGTGAACTAGCTGATAATTTTTGCTATTATAATAAAAGATATGATTCTATAGAA 238484 || ||||||||| | ||||| || || |||| ||||||| | |||||||| || || Sbjct 1976 ATCAGACGTGAATTGGCTGACAACTTCTGCTTTTATAATCCTAACTATGATTCACTAAAA 1917 Query 238485 TCCACACATTCATGGGCACGAGAAACATTAGAAGCACACGTAAATGATAGAAGAAAATAT 238544 | | |||||| | | |||| | | | || ||| |||| | | ||| Sbjct 1916 GGTGCTCCGGAATGGGCTCAAAAAACTCTTAATGATCATCGAAAAGATAAACGTCCTTAT 1857 Query 238545 ATTTACTCTTTAAAACAGCTCGAGAGA-GCCGAAACTCACGATCCCCTATGGAATTCCGC 238603 | ||| || ||| || | || ||| | |||| || ||||| || |||||| | Sbjct 1856 GTGTACACTAAGAAAGAGTTTGA-AGACGGTAAAACGCATGATCCTCTGTGGAATGCTTG 1798 Query 238604 CCAGATACAAATGGTAAGACTAGGCAAAA-TGCATAGTTTCTTACGAATGTATTGGGCTA 238662 ||||| ||| |||| | | | || ||| | ||| ||| | | ||||||||||||||| Sbjct 1797 TCAGATGCAATTGGTTCG-CGATGCTAAACTTCATGGTTACATGAGAATGTATTGGGCTA 1739 Query 238663 AAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAG-TATTTATCTG 238721 |||||||||||||||||| || |||||| | ||||| || || || | ||| ||| | Sbjct 1738 AAAAGATACTTGAATGGAGTAAATCTCCCGAAGAAGCACTG-GAAATCGCTATCTATTTA 1680 Query 238722 AACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCA 238781 || || || | |||||| || ||| ||||| || || | |||||| ||| | ||||| Sbjct 1679 AATGACAATTTCGAACTAGATGGTCGTGATCCAAATGGTTTCGTAGGCTGTCTCTGGTCC 1620 Query 238782 ATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATAC 238841 | | || |||| || | |||| ||| ||| | || ||||||||| | ||||| Sbjct 1619 GTTGGGGGTATACATGACCAAGGATGGGGTGAAAGAGCGATCTTTGGAAAAATACGATAC 1560 Query 238842 ATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGCTTTTAT 238888 |||||||||||||| || | ||||||||| | || ||||||| Sbjct 1559 ATGAATTATGAAGGTTGCAAAAGAAAATTTGACATCAACACTTTTAT 1513 >seq453 Length=2394413 Score = 158 bits (174), Expect = 3e-33 Identities = 309/449 (69%), Gaps = 6/449 (1%) Strand=Plus/Minus Query 238428 AGACGTGAACTAGCTGATAATTTTTGCTATTATAATAAAAGATATGATTCTATAGAATCC 238487 ||||||||| | ||||| || || |||| |||||| | |||||||| || || Sbjct 2274999 AGACGTGAATTGGCTGACAACTTCTGCTTTTATAACCCTAACTATGATTCACTAAAAGGT 2274940 Query 238488 ACACATTCATGGGCACGAGAAACATTAGAAGCACACGTAAATGATAGAAGAAAATATATT 238547 | | |||||| | | |||| | | | || ||| |||| | | ||| | Sbjct 2274939 GCTCCGGAATGGGCTCAAAAAACTCTTAATGATCATCGAAAAGATAAACGTCCTTATGTG 2274880 Query 238548 TACTCTTTAAAACAGCTCGAGAGA-GCCGAAACTCACGATCCCCTATGGAATTCCGCCCA 238606 ||| || |||| || | || ||| | ||||||| ||||| || |||||| | || Sbjct 2274879 TACACTAAAAAAGAGTTTGA-AGACGGTAAAACTCATGATCCTCTGTGGAATGCTTGTCA 2274821 Query 238607 GATACAAATGGTAAGACTAGGCAAAA-TGCATAGTTTCTTACGAATGTATTGGGCTAAAA 238665 ||| ||| |||| | | | || ||| | ||| ||| | | |||||||||||||||||| Sbjct 2274820 GATGCAATTGGTTCG-CGATGCTAAACTTCATGGTTACATGAGAATGTATTGGGCTAAAA 2274762 Query 238666 AGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAG-TATTTATCTGAAC 238724 ||||||| ||||||| || |||||| | ||||| || || || | ||| ||| | || Sbjct 2274761 AGATACTAGAATGGAGTAAATCTCCGGAAGAAGCACTG-GAAATCGCTATCTATTTAAAT 2274703 Query 238725 GATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATA 238784 || |||| ||| | || ||| ||||| || || | |||||| ||| | ||||| | Sbjct 2274702 GACAAATTTGAATTAGATGGTCGCGATCCAAATGGTTTCGTAGGCTGTCTCTGGTCCGTT 2274643 Query 238785 TGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATG 238844 | || |||| || | |||| ||| ||| | || ||||||||| | |||||||| Sbjct 2274642 GGGGGTATACATGACCAAGGATGGGGTGAAAGAGCGATCTTTGGAAAAATACGATACATG 2274583 Query 238845 AATTATGAAGGAACTAAGAAAAAATTTGA 238873 ||||||||||| || | ||||||||| Sbjct 2274582 AATTATGAAGGTTGCAAAAGAAAATTTGA 2274554 Score = 150 bits (166), Expect = 4e-31 Identities = 290/424 (68%), Gaps = 9/424 (2%) Strand=Plus/Minus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 || ||||| || || |||||| ||| || | || || || | |||||| | ||| Sbjct 12140 GACGGTATTGTAAATGAAAATTTAGCTGAAAGATTTATTCGTGATATCCAGATTACCGAA 12081 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || |||||||||| || || || || || || || ||| | || || ||||||||||| Sbjct 12080 GCTCGATGTTTTTATGGTTTTCAAATTGCGATTGAGAATGTGCACTCTGAGATGTACAGC 12021 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT--CTA 269054 ||| | ||||| ||||| || |||| || | | | | | ||||| ||| Sbjct 12020 CTACTGATAGACACTTACATCAGTGATCCTGACCAGCGGGA--GTTTCTTTTCAAAGCTA 11963 Query 269055 TGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT----AAAC 269110 | |||| | ||||| |||| |||||||||| | || |||| || | Sbjct 11962 TTGAAACTGTCCCATGTGTTGCTCAAAAGGCTGAATGGGCAATAAACTGGACTGCAAATC 11903 Query 269111 GATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170 || | | || | ||||| || |||| ||||| ||| |||||||| || || Sbjct 11902 CATCAGTCTCTTTT-GCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTC 11844 Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230 || || ||||| ||||||||||||||| | || || | ||||| |||||||| |||||| Sbjct 11843 TCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACT 11784 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290 |||||||||||| | || | || ||||| ||||| || || || || ||||| ||| Sbjct 11783 TTCTCTAACGAACTTATCTCTCGAGATGAAGGATTACATTGTGATTTTGCCTGTTTGTTA 11724 Query 269291 TTTA 269294 |||| Sbjct 11723 TTTA 11720 >seq448 Length=3678511 Score = 154 bits (170), Expect = 3e-32 Identities = 249/350 (71%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 165089 ATTTATACCGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACAT 165148 |||| || ||| | | |||||| ||||||| |||| |||||||||||| || Sbjct 3039004 ATTTTCACTGATGATCAAGAATGGTCCTCTTGGAAACAAATGTCCGATCCTGTTTTGCAC 3038945 Query 165149 ATAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTA 165208 || || || | | |||||| ||||| |||||||| | || || || || | |||| Sbjct 3038944 ATTGAACTCCGTAAATGGGCTGATATTATGTTGATTTCTCCATTGGATGCTAATACTTTA 3038885 Query 165209 GCGAAGATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAAT 165268 || || || || ||||| ||| ||||||| ||||| ||||||| | || ||| || Sbjct 3038884 GCCAAAATCTCTTCTGGTATTTGTGATAACTTATTAACTTGTATAGCCCGTGCCTGGGAT 3038825 Query 165269 ATTAATAAACCTTTACTTTTCTGTCCAGCTATGAATACACTTATGTGGGAACATCCTATT 165328 | | || |||||| | || |||||| ||||||| ||| | |||||||||||||| | Sbjct 3038824 CTGCAAAAGCCTTTATTATTTTGTCCATCTATGAACACATTCATGTGGGAACATCCAGTC 3038765 Query 165329 AC-TGAGCAGCATATAGAAACTCTTAAGCATATGGGG-TACA-TAGAAGTTGAGTGTATT 165385 || | | ||| |||||| ||| || | |||||| |||| | | | ||| | || Sbjct 3038764 ACATCTGAAGCTATTAGAAA-GCTTGAG-ACATGGGGTTACACTTTGATTCCAGT-TGTT 3038708 Query 165386 GAGAAAAAGCTAGCTTGTGGTGATATTGGAAAAGGTGCCATGGCAGAAGT 165435 |||||||| |||||||||||||||||| || || ||||| ||||| Sbjct 3038707 TCCAAAAAGCTTGCTTGTGGTGATATTGGACCTGGAGCTATGGCTGAAGT 3038658 >seq468 Length=1118636 Score = 150 bits (166), Expect = 4e-31 Identities = 290/424 (68%), Gaps = 9/424 (2%) Strand=Plus/Minus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 || ||||| || || |||||| ||| || | || || || | |||||| | ||| Sbjct 1106688 GACGGTATTGTAAATGAAAATTTAGCTGAAAGATTTATTCGTGATATCCAGATTACCGAA 1106629 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || |||||||||| || || || || || || || ||| | || || ||||||||||| Sbjct 1106628 GCTCGATGTTTTTATGGTTTTCAAATTGCGATTGAGAATGTGCACTCTGAGATGTACAGC 1106569 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT--CTA 269054 ||| | ||||| ||||| || |||| || | | | | | ||||| ||| Sbjct 1106568 CTACTGATAGACACTTACATCAGTGATCCTGACCAGCGGGA--GTTTCTTTTCAAAGCTA 1106511 Query 269055 TGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT----AAAC 269110 | |||| | ||||| |||| |||||||||| | || |||| || | Sbjct 1106510 TTGAAACTGTCCCATGTGTTGCTCAAAAGGCTGAATGGGCAATAAACTGGACTGCAAATC 1106451 Query 269111 GATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170 || | | || | ||||| || |||| ||||| ||| |||||||| || || Sbjct 1106450 CATCAGTCTCTTTT-GCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTC 1106392 Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230 || || ||||| ||||||||||||||| | || || | ||||| |||||||| |||||| Sbjct 1106391 TCAGGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACT 1106332 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290 |||||||||||| | || | || ||||| ||||| || || || || ||||| ||| Sbjct 1106331 TTCTCTAACGAACTTATCTCTCGAGATGAAGGATTACATTGTGATTTTGCCTGTTTGTTA 1106272 Query 269291 TTTA 269294 |||| Sbjct 1106271 TTTA 1106268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151388943780828