Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq444 86.0 5e-12 >seq444 Length=5217058 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 48514 TAACACTAAATG--AAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 ||| |||||||| |||| || | || || ||||||||||| |||| | ||| | Sbjct 3541587 TAATACTAAATGTAAAGT-TGAT-TCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCA 3541644 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 ||||| ||||| ||||| || | || | |||||| ||||| || | | ||||||| Sbjct 3541645 TCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTG 3541704 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 || ||||| ||||| | | ||||| |||| || || || | || ||| Sbjct 3541705 TCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATG 3541764 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| ||||| ||||| || ||||| ||||| Sbjct 3541765 GTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421247909106641