Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq443 140 4e-28
>seq443
Length=6836010
Score = 140 bits (154), Expect = 4e-28
Identities = 236/335 (70%), Gaps = 10/335 (3%)
Strand=Plus/Plus
Query 7065 ATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAAT 7124
|||||||||| | | | || | ||| || |||||||| | ||| | |||| ||||
Sbjct 505861 ATTCCAAGCACTAACAATAAGTCTTCTGTCGTTTGGATTCGATTTGATTTTTTCAATAAC 505920
Query 7125 TATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGC 7184
||| || || || ||||| ||||| |||||| |||| || ||||| || ||
Sbjct 505921 ATTTTTCAACTGGTCAATACCTTGACCAGAATAATTTGTATTTGCATCAATATATTTGGC 505980
Query 7185 TCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGA--TGA 7242
|| |||||| |||||||||||||||||||||||||||||| |||||||| | | |||
Sbjct 505981 ACCCCAATGTCGCCATTGAAACCCATAAATAGGACCTAAATCTCCTTCTTCTCTATCTGA 506040
Query 7243 TTAA--ATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCCCAAATATGTACAG 7300
|| | | |||| | ||||| ||| ||||||| ||||||||||||||| ||
Sbjct 506041 GAAACCAACAGAATC--TAAAAATT--CTTTCGATCCATTAGCATCCCAAATATGAACTC 506096
Query 7301 Attttt-ttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCT 7359
||||| ||| | |||| ||||| ||||||| |||||| | |||||| ||
Sbjct 506097 CTTTTTCTTGCAATATTT-TGCTGTTTGTTTCCCCTTTAATGAACCACAGAAGTTCCTCC 506155
Query 7360 ACTATTCCACGCCAAAACATTCTTTTTGTAGTGAA 7394
| | ||| || |||| | | ||| || || ||
Sbjct 506156 AACACTCCTCGAAAAAAAACACGTTTAGTTGTAAA 506190
Score = 118 bits (130), Expect = 1e-21
Identities = 208/303 (69%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 164794 GTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATT 164853
|| ||||| ||| || | || ||||| |||||||| || || || || ||| || ||
Sbjct 2862040 GTAGTTAACCAGCTGTTATCAAAAATGGATGGTGTTGATGGGTTGAACAACATTCTAGTT 2862099
Query 164854 GTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTA 164913
| |||||||| || || ||| | |||||||| |||||| | |||||||| ||||
Sbjct 2862100 ATCGGTATGACAAATCGTAAAGATATGATTGATGACGCTTTACTGCGACCTGGAAGATTT 2862159
Query 164914 GAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTT 164973
|| || ||||||||||||||||||| || | ||||||| |||||||| || ||
Sbjct 2862160 GAGGTGCAAATAGAAATAGGATTACCTGATTCAAAAGGACGTGAGCAAATTTTGAAGATT 2862219
Query 164974 CATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATA 165033
|| | |||| | |||| | | || ||||||||| | | || |
Sbjct 2862220 CACACGAAGCGAATGCGAGAATGTGGAAGGCTCGCTGATGATGTAGATCTTCAAGAACTT 2862279
Query 165034 GCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCTCAA 165093
||| || |||| ||||||| ||| |||||| | | ||| || || | || ||||||
Sbjct 2862280 GCTTCCAAAACGAAAAATTTCTCTGGAGCTGAACTGGCGGGGTTGGTTCGTGCAGCTCAA 2862339
Query 165094 TCA 165096
|||
Sbjct 2862340 TCA 2862342
Score = 111 bits (122), Expect = 2e-19
Identities = 255/380 (67%), Gaps = 8/380 (2%)
Strand=Plus/Plus
Query 164391 AAATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTT 164450
||| ||| |||||||| | ||||||| |||||||| ||| ||||| ||||||
Sbjct 2861544 AAACTGGGATTTTGAATCACTGGGAGTTGGTGGACTCGATAAGGAATTCAACGATATTTT 2861603
Query 164451 CAGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAA 164510
|||||| || || || |||| | | ||||| | || | | || | | || | |
Sbjct 2861604 CAGACGGGCTTTCGCGTCTAAAGTAATTCCTTTAGAGTTGGTTGAACAGCTCGGATTGAC 2861663
Query 164511 ACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCG 164570
||| | ||||| || | ||| |||| ||||||||| |||||||| | || || ||
Sbjct 2861664 ACACGTGAAAGGTATCCTGTTATATGGTCCTCCTGGTACAGGTAAAACTCTTATTGCGCG 2861723
Query 164571 ATGCATTGCTCAAGCTTTTAAATCGCGACCCGTTAAAATTGTTAATGGTCC-TGAATTAT 164629
| |||| |||| | || | || || |||| || ||||| || | |||| |
Sbjct 2861724 ACAAATTGGTCAAATGCTCAACGCTCGGCCACCACAAATCGTCAATGGGCCGTCAATT-T 2861782
Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689
| |||||||||| ||||| || ||| | ||| | ||||| || ||| || |||||||
Sbjct 2861783 TAGACAAATATGTTGGTGAATCTGAATCCAATATAAGAAAATTATTTGCTGATGCTGAAG 2861842
Query 164690 AAGAACAAAAGAAAGCAGG---TTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGA 164746
||| ||||||| || | || || | ||| | ||| |||||||||| |
Sbjct 2861843 CTGAATTCAAGAAAGTCGGCAATCGTTCTGGT---CTTCATATAATTATTTTTGATGAAA 2861899
Query 164747 TAGATGCTCTTTGCAAAAAA 164766
| |||||| | || ||| ||
Sbjct 2861900 TTGATGCTATATGTAAACAA 2861919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595867225575600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |