Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq443 140 4e-28 >seq443 Length=6836010 Score = 140 bits (154), Expect = 4e-28 Identities = 236/335 (70%), Gaps = 10/335 (3%) Strand=Plus/Plus Query 7065 ATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAAT 7124 |||||||||| | | | || | ||| || |||||||| | ||| | |||| |||| Sbjct 505861 ATTCCAAGCACTAACAATAAGTCTTCTGTCGTTTGGATTCGATTTGATTTTTTCAATAAC 505920 Query 7125 TATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGC 7184 ||| || || || ||||| ||||| |||||| |||| || ||||| || || Sbjct 505921 ATTTTTCAACTGGTCAATACCTTGACCAGAATAATTTGTATTTGCATCAATATATTTGGC 505980 Query 7185 TCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGA--TGA 7242 || |||||| |||||||||||||||||||||||||||||| |||||||| | | ||| Sbjct 505981 ACCCCAATGTCGCCATTGAAACCCATAAATAGGACCTAAATCTCCTTCTTCTCTATCTGA 506040 Query 7243 TTAA--ATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCCCAAATATGTACAG 7300 || | | |||| | ||||| ||| ||||||| ||||||||||||||| || Sbjct 506041 GAAACCAACAGAATC--TAAAAATT--CTTTCGATCCATTAGCATCCCAAATATGAACTC 506096 Query 7301 Attttt-ttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCT 7359 ||||| ||| | |||| ||||| ||||||| |||||| | |||||| || Sbjct 506097 CTTTTTCTTGCAATATTT-TGCTGTTTGTTTCCCCTTTAATGAACCACAGAAGTTCCTCC 506155 Query 7360 ACTATTCCACGCCAAAACATTCTTTTTGTAGTGAA 7394 | | ||| || |||| | | ||| || || || Sbjct 506156 AACACTCCTCGAAAAAAAACACGTTTAGTTGTAAA 506190 Score = 118 bits (130), Expect = 1e-21 Identities = 208/303 (69%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 164794 GTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATT 164853 || ||||| ||| || | || ||||| |||||||| || || || || ||| || || Sbjct 2862040 GTAGTTAACCAGCTGTTATCAAAAATGGATGGTGTTGATGGGTTGAACAACATTCTAGTT 2862099 Query 164854 GTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTA 164913 | |||||||| || || ||| | |||||||| |||||| | |||||||| |||| Sbjct 2862100 ATCGGTATGACAAATCGTAAAGATATGATTGATGACGCTTTACTGCGACCTGGAAGATTT 2862159 Query 164914 GAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTT 164973 || || ||||||||||||||||||| || | ||||||| |||||||| || || Sbjct 2862160 GAGGTGCAAATAGAAATAGGATTACCTGATTCAAAAGGACGTGAGCAAATTTTGAAGATT 2862219 Query 164974 CATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATA 165033 || | |||| | |||| | | || ||||||||| | | || | Sbjct 2862220 CACACGAAGCGAATGCGAGAATGTGGAAGGCTCGCTGATGATGTAGATCTTCAAGAACTT 2862279 Query 165034 GCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCTCAA 165093 ||| || |||| ||||||| ||| |||||| | | ||| || || | || |||||| Sbjct 2862280 GCTTCCAAAACGAAAAATTTCTCTGGAGCTGAACTGGCGGGGTTGGTTCGTGCAGCTCAA 2862339 Query 165094 TCA 165096 ||| Sbjct 2862340 TCA 2862342 Score = 111 bits (122), Expect = 2e-19 Identities = 255/380 (67%), Gaps = 8/380 (2%) Strand=Plus/Plus Query 164391 AAATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTT 164450 ||| ||| |||||||| | ||||||| |||||||| ||| ||||| |||||| Sbjct 2861544 AAACTGGGATTTTGAATCACTGGGAGTTGGTGGACTCGATAAGGAATTCAACGATATTTT 2861603 Query 164451 CAGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAA 164510 |||||| || || || |||| | | ||||| | || | | || | | || | | Sbjct 2861604 CAGACGGGCTTTCGCGTCTAAAGTAATTCCTTTAGAGTTGGTTGAACAGCTCGGATTGAC 2861663 Query 164511 ACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCG 164570 ||| | ||||| || | ||| |||| ||||||||| |||||||| | || || || Sbjct 2861664 ACACGTGAAAGGTATCCTGTTATATGGTCCTCCTGGTACAGGTAAAACTCTTATTGCGCG 2861723 Query 164571 ATGCATTGCTCAAGCTTTTAAATCGCGACCCGTTAAAATTGTTAATGGTCC-TGAATTAT 164629 | |||| |||| | || | || || |||| || ||||| || | |||| | Sbjct 2861724 ACAAATTGGTCAAATGCTCAACGCTCGGCCACCACAAATCGTCAATGGGCCGTCAATT-T 2861782 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | |||||||||| ||||| || ||| | ||| | ||||| || ||| || ||||||| Sbjct 2861783 TAGACAAATATGTTGGTGAATCTGAATCCAATATAAGAAAATTATTTGCTGATGCTGAAG 2861842 Query 164690 AAGAACAAAAGAAAGCAGG---TTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGA 164746 ||| ||||||| || | || || | ||| | ||| |||||||||| | Sbjct 2861843 CTGAATTCAAGAAAGTCGGCAATCGTTCTGGT---CTTCATATAATTATTTTTGATGAAA 2861899 Query 164747 TAGATGCTCTTTGCAAAAAA 164766 | |||||| | || ||| || Sbjct 2861900 TTGATGCTATATGTAAACAA 2861919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595867225575600