Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq444 125 6e-24
>seq444
Length=5217058
Score = 125 bits (138), Expect = 6e-24
Identities = 171/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || || | | |||||| |||||||| | |||||||| ||||| |
Sbjct 3541789 AAAATTTGCATACCACCACGAAGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATA 3541848
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|||||||| || | ||| ||||| |||||||| || | ||||| || | |||
Sbjct 3541849 TTATAATCACTGAGAGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGT 3541908
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
|| || || || |||||||||||||| | ||||| || || ||| | | ||| |||
Sbjct 3541909 TGGTCAGGTGGGATACCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCA 3541968
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| | || || |||| || ||||| || |||||||||||||| || || || |||||
Sbjct 3541969 GAAGGTTCAACCTCAAGTGTAATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027
Score = 118 bits (130), Expect = 1e-21
Identities = 170/240 (71%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || || | | ||| || |||||||| | ||||| || ||||| | |
Sbjct 3542365 AAAATTTGCATACCACCACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATG 3542424
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|| |||||||||| || ||| || |||||||| || | ||||| || | ||
Sbjct 3542425 TTGTAATCGCTCAGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGT 3542484
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
||||| || || |||||||| ||||| | || || || || || | | ||||||
Sbjct 3542485 TGATCGGGTGGGATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCC 3542544
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
| | || || |||| ||||||||||||||||||||||| || || || || ||||||
Sbjct 3542545 GATGGTTCAACCTCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCATG 3542604
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
||| || || || || ||||| ||||| || || | ||| || || | || ||| ||
Sbjct 3541584 TCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAG--AAAGGGTTCGA 3541641
Query 94852 --ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909
|||||| |||||||| || | ||||| | | || ||||| || || || |||||
Sbjct 3541642 CCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCC 3541701
Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969
||||| | ||||| |||||||| | | ||||| | | || || || | |||
Sbjct 3541702 TTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTG 3541761
Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||||| ||||| || ||||| || || || |||||
Sbjct 3541762 ATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| || || |||||||| | ||||| || | ||| || || || ||||||||||| ||
Sbjct 3542220 ATCTTCGAGTTGTTTTCCAGCGAAGATCAAACGTTGTTGGTCGGGGGGAATACCTTCCTT 3542279
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | ||||| ||||||||| | | || || | | || || || | || ||
Sbjct 3542280 GTCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAAT 3542339
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||||||||| || ||||| || || || |||||
Sbjct 3542340 GGTTTTTCCAGTGAGGGTTTTAACGAAAATTTGCAT 3542375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448287608066760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |