Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq444 125 6e-24 >seq444 Length=5217058 Score = 125 bits (138), Expect = 6e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | | |||||| |||||||| | |||||||| ||||| | Sbjct 3541789 AAAATTTGCATACCACCACGAAGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATA 3541848 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || | ||| ||||| |||||||| || | ||||| || | ||| Sbjct 3541849 TTATAATCACTGAGAGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGT 3541908 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || || |||||||||||||| | ||||| || || ||| | | ||| ||| Sbjct 3541909 TGGTCAGGTGGGATACCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCA 3541968 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| || ||||| || |||||||||||||| || || || ||||| Sbjct 3541969 GAAGGTTCAACCTCAAGTGTAATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027 Score = 118 bits (130), Expect = 1e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | | ||| || |||||||| | ||||| || ||||| | | Sbjct 3542365 AAAATTTGCATACCACCACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATG 3542424 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || |||||||||| || ||| || |||||||| || | ||||| || | || Sbjct 3542425 TTGTAATCGCTCAGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGT 3542484 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| || || |||||||| ||||| | || || || || || | | |||||| Sbjct 3542485 TGATCGGGTGGGATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCC 3542544 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | || || |||| ||||||||||||||||||||||| || || || || |||||| Sbjct 3542545 GATGGTTCAACCTCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCATG 3542604 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||| || || || || ||||| ||||| || || | ||| || || | || ||| || Sbjct 3541584 TCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAG--AAAGGGTTCGA 3541641 Query 94852 --ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 |||||| |||||||| || | ||||| | | || ||||| || || || ||||| Sbjct 3541642 CCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCC 3541701 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969 ||||| | ||||| |||||||| | | ||||| | | || || || | ||| Sbjct 3541702 TTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTG 3541761 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| ||||| || ||||| || || || ||||| Sbjct 3541762 ATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || |||||||| | ||||| || | ||| || || || ||||||||||| || Sbjct 3542220 ATCTTCGAGTTGTTTTCCAGCGAAGATCAAACGTTGTTGGTCGGGGGGAATACCTTCCTT 3542279 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| ||||||||| | | || || | | || || || | || || Sbjct 3542280 GTCCTGGATTTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAAT 3542339 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||| || ||||| || || || ||||| Sbjct 3542340 GGTTTTTCCAGTGAGGGTTTTAACGAAAATTTGCAT 3542375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448287608066760