Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq443 208 1e-49 seq444 199 6e-47 >seq443 Length=6836010 Score = 208 bits (230), Expect = 1e-49 Identities = 208/270 (77%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| || | | | | || |||||||||||||| |||||||||||||||||| Sbjct 2064199 GCAAAACGTCACCGAAAAGTTTTACGTGATAACATCCAAGGTATCACCAAGCCAGCTATC 2064140 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| | ||||| ||||| ||| ||||||| ||| |||| ||||| | | Sbjct 2064139 CGTCGTCTTGCTCGAAGAGGTGGTGTCAAACGTATCTCTGGTTTGATCTACGAAGAAACT 2064080 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | ||| | ||||| | | ||| || | |||||| || ||| || ||| Sbjct 2064079 CGAGGTGTTCTTAAGGTTTTCCTTGAAAACGTCATTCGAGATGCTGTCACCTACACTGAG 2064020 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||| ||| |||||||| | |||||||| ||||||||||||| Sbjct 2064019 CACGCCAAGAGGAAGACTGTAACCGCCATGGATGTGGTCTATGCTCTGAAACGTCAAGGA 2063960 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 | | | |||||||| || |||||||| Sbjct 2063959 AGAACTCTGTATGGTTTCGGTGGTTAATCT 2063930 >seq444 Length=5217058 Score = 199 bits (220), Expect = 6e-47 Identities = 205/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| ||||| || | | | ||||||||||||||||| || || |||||||||||| Sbjct 614274 GCTAAACGTCACCGAAAGGTTTTACGAGATAACATCCAAGGTATTACTAAGCCAGCTATC 614215 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || | ||||| || || ||| |||||||| | |||||||||| | | Sbjct 614214 CGGCGTCTTGCCCGAAGAGGTGGTGTAAAACGTATCTCTGGACTTATCTATGAAGAAACT 614155 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||| | | | |||||||| ||||||| | || || ||| Sbjct 614154 CGTGGTGTATTGAAAGTTTTCTTGGAAAACGTTATCCGTGATGCTGTAACATACACTGAG 614095 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| | ||||||||||| | |||||| | || ||||| |||||||| ||||| Sbjct 614094 CACGCTAAGAGGAAGACTGTCACTGCTATGGATGTTGTATATGCCTTGAAACGACAAGGA 614035 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | |||||||||||||| |||||| Sbjct 614034 AGAACCCTTTATGGTTTTGGAGGTTAAT 614007 Score = 199 bits (220), Expect = 6e-47 Identities = 205/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| ||||| || | | | ||||||||||||||||| || || |||||||||||| Sbjct 620324 GCTAAACGTCACCGAAAGGTTTTACGAGATAACATCCAAGGTATTACTAAGCCAGCTATC 620383 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || | ||||| || || ||| |||||||| | |||||||||| | | Sbjct 620384 CGGCGTCTTGCCCGAAGAGGTGGTGTAAAACGTATCTCTGGACTTATCTATGAAGAAACT 620443 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||| | | | |||||||| ||||||| | || || ||| Sbjct 620444 CGTGGTGTATTGAAAGTTTTCTTGGAAAACGTTATCCGTGATGCTGTAACATACACTGAG 620503 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| | ||||||||||| | |||||| | || ||||| |||||||| ||||| Sbjct 620504 CACGCTAAGAGGAAGACTGTCACTGCTATGGATGTTGTATATGCCTTGAAACGACAAGGA 620563 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | |||||||||||||| |||||| Sbjct 620564 AGAACCCTTTATGGTTTTGGAGGTTAAT 620591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074613929213