Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq443 208 1e-49
seq444 199 6e-47
>seq443
Length=6836010
Score = 208 bits (230), Expect = 1e-49
Identities = 208/270 (77%), Gaps = 0/270 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || ||||| || | | | | || |||||||||||||| ||||||||||||||||||
Sbjct 2064199 GCAAAACGTCACCGAAAAGTTTTACGTGATAACATCCAAGGTATCACCAAGCCAGCTATC 2064140
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| ||||| | ||||| ||||| ||| ||||||| ||| |||| ||||| | |
Sbjct 2064139 CGTCGTCTTGCTCGAAGAGGTGGTGTCAAACGTATCTCTGGTTTGATCTACGAAGAAACT 2064080
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | |||| | ||| | ||||| | | ||| || | |||||| || ||| || |||
Sbjct 2064079 CGAGGTGTTCTTAAGGTTTTCCTTGAAAACGTCATTCGAGATGCTGTCACCTACACTGAG 2064020
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | |||||||| ||| |||||||| | |||||||| |||||||||||||
Sbjct 2064019 CACGCCAAGAGGAAGACTGTAACCGCCATGGATGTGGTCTATGCTCTGAAACGTCAAGGA 2063960
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
| | | |||||||| || ||||||||
Sbjct 2063959 AGAACTCTGTATGGTTTCGGTGGTTAATCT 2063930
>seq444
Length=5217058
Score = 199 bits (220), Expect = 6e-47
Identities = 205/268 (76%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||| ||||| || | | | ||||||||||||||||| || || ||||||||||||
Sbjct 614274 GCTAAACGTCACCGAAAGGTTTTACGAGATAACATCCAAGGTATTACTAAGCCAGCTATC 614215
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| || || | ||||| || || ||| |||||||| | |||||||||| | |
Sbjct 614214 CGGCGTCTTGCCCGAAGAGGTGGTGTAAAACGTATCTCTGGACTTATCTATGAAGAAACT 614155
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||| ||||| | ||| | | | |||||||| ||||||| | || || |||
Sbjct 614154 CGTGGTGTATTGAAAGTTTTCTTGGAAAACGTTATCCGTGATGCTGTAACATACACTGAG 614095
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||||| | ||||||||||| | |||||| | || ||||| |||||||| |||||
Sbjct 614094 CACGCTAAGAGGAAGACTGTCACTGCTATGGATGTTGTATATGCCTTGAAACGACAAGGA 614035
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700
| | |||||||||||||| ||||||
Sbjct 614034 AGAACCCTTTATGGTTTTGGAGGTTAAT 614007
Score = 199 bits (220), Expect = 6e-47
Identities = 205/268 (76%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||| ||||| || | | | ||||||||||||||||| || || ||||||||||||
Sbjct 620324 GCTAAACGTCACCGAAAGGTTTTACGAGATAACATCCAAGGTATTACTAAGCCAGCTATC 620383
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| || || | ||||| || || ||| |||||||| | |||||||||| | |
Sbjct 620384 CGGCGTCTTGCCCGAAGAGGTGGTGTAAAACGTATCTCTGGACTTATCTATGAAGAAACT 620443
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||| ||||| | ||| | | | |||||||| ||||||| | || || |||
Sbjct 620444 CGTGGTGTATTGAAAGTTTTCTTGGAAAACGTTATCCGTGATGCTGTAACATACACTGAG 620503
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||||| | ||||||||||| | |||||| | || ||||| |||||||| |||||
Sbjct 620504 CACGCTAAGAGGAAGACTGTCACTGCTATGGATGTTGTATATGCCTTGAAACGACAAGGA 620563
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700
| | |||||||||||||| ||||||
Sbjct 620564 AGAACCCTTTATGGTTTTGGAGGTTAAT 620591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074613929213
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |