Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq445 95.1 2e-15 >seq445 Length=4539973 Score = 95.1 bits (104), Expect = 2e-15 Identities = 233/348 (67%), Gaps = 9/348 (3%) Strand=Plus/Minus Query 5303 ATTTGTAAACTCTCGCCACATTTTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGA 5362 || || ||| | || ||||||||| || | |||||||| || | |||| ||| || Sbjct 3631729 ATCTGAAAAATATCTCCACATTTTTTCTTTCAAAGTTCTATTAAATCTTTCAACTATAGA 3631670 Query 5363 TGCTTTGAGATTGCTGAAT--GTTGAATACAGATTTATCTTGTGCTGCTTCATCAGATCT 5420 |||||| | ||| ||||| || | | || || || || || | ||| | | || Sbjct 3631669 TGCTTTAACATT--TGAATATGTAGCAAACCATTTAATATTATGTTTCTTAAATA-ATGA 3631613 Query 5421 TTGAA-TTCTTTGTTGTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGGGATACG 5479 ||||| || ||| || | ||| || ||||| |||||| || | || ||||| || | Sbjct 3631612 TTGAACTTTTTTATTTTCAAATTCATTACCATGATCAGTTTGAATTTTATTAGGTATTCT 3631553 Query 5480 ACCTTGCTGAAGTACAGACTTCATAGCACTTGTGACATCTACACCACTTTTAGACTTAAT 5539 | ||| || || | || | |||| | |||||| || | |||| || || | Sbjct 3631552 ATCTTC---AAATATATTATTGAAAGCATTATATACATCTTCAGAATTTTTGGATTTCAA 3631496 Query 5540 TGGAACTGCCCAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCC 5599 ||| | |||| | |||||||||||| ||| || | ||| | | ||| ||| | Sbjct 3631495 TGGTATAACCCATGAATATTTTGAAAAACAATCAATAACTGTTAATAAATATTTGAAATT 3631436 Query 5600 TTTATTGACTGTTGCATATGGAATCATCTCAACCAAGTCAGCTTGCCA 5647 | ||| || |||||||||| ||||| ||||| || || |||||||| Sbjct 3631435 ATCATTTTCTTTTGCATATGGTATCATTTCAACTAAATCTGCTTGCCA 3631388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97973654231114