Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq445 95.1 2e-15
>seq445
Length=4539973
Score = 95.1 bits (104), Expect = 2e-15
Identities = 233/348 (67%), Gaps = 9/348 (3%)
Strand=Plus/Minus
Query 5303 ATTTGTAAACTCTCGCCACATTTTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGA 5362
|| || ||| | || ||||||||| || | |||||||| || | |||| ||| ||
Sbjct 3631729 ATCTGAAAAATATCTCCACATTTTTTCTTTCAAAGTTCTATTAAATCTTTCAACTATAGA 3631670
Query 5363 TGCTTTGAGATTGCTGAAT--GTTGAATACAGATTTATCTTGTGCTGCTTCATCAGATCT 5420
|||||| | ||| ||||| || | | || || || || || | ||| | | ||
Sbjct 3631669 TGCTTTAACATT--TGAATATGTAGCAAACCATTTAATATTATGTTTCTTAAATA-ATGA 3631613
Query 5421 TTGAA-TTCTTTGTTGTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGGGATACG 5479
||||| || ||| || | ||| || ||||| |||||| || | || ||||| || |
Sbjct 3631612 TTGAACTTTTTTATTTTCAAATTCATTACCATGATCAGTTTGAATTTTATTAGGTATTCT 3631553
Query 5480 ACCTTGCTGAAGTACAGACTTCATAGCACTTGTGACATCTACACCACTTTTAGACTTAAT 5539
| ||| || || | || | |||| | |||||| || | |||| || || |
Sbjct 3631552 ATCTTC---AAATATATTATTGAAAGCATTATATACATCTTCAGAATTTTTGGATTTCAA 3631496
Query 5540 TGGAACTGCCCAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCC 5599
||| | |||| | |||||||||||| ||| || | ||| | | ||| ||| |
Sbjct 3631495 TGGTATAACCCATGAATATTTTGAAAAACAATCAATAACTGTTAATAAATATTTGAAATT 3631436
Query 5600 TTTATTGACTGTTGCATATGGAATCATCTCAACCAAGTCAGCTTGCCA 5647
| ||| || |||||||||| ||||| ||||| || || ||||||||
Sbjct 3631435 ATCATTTTCTTTTGCATATGGTATCATTTCAACTAAATCTGCTTGCCA 3631388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97973654231114
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |