Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq450 174 3e-38 >seq450 Length=3639652 Score = 174 bits (192), Expect = 3e-38 Identities = 358/529 (68%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 193641 CCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCA 193700 |||| ||| || || ||| | | |||||||| ||||| |||||||| || ||| || Sbjct 785288 CCTGATGAAATATACAATTTAGCAGCTCAAAGCCATGTCAAAGTTTCATTCGAGCTGAGT 785347 Query 193701 GAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATG 193760 || |||||| | ||||| ||||| | |||||| | ||| || | || || | | | Sbjct 785348 GAATATACTGCAAATGTAGATGCAATTGGAACTTTAAGAGTATTAGATGCTATCAGAAGC 785407 Query 193761 TTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGT 193820 | ||| ||| | | ||| | ||||| ||||| || || ||||| |||||| Sbjct 785408 TGTGGATTGGGAACCAAAGTTAAATTTTATCAAGCATCAACTAGTGAACTTTATGGTAAA 785467 Query 193821 GTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTA 193880 || | || | |||| | |||| ||||| || ||||| | || ||||| ||||| Sbjct 785468 GTCCAAGAAATACCACAAAATGAAAAAACACCTTTCTATCCAAGATCGCCTTACGGTGTT 785527 Query 193881 GCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATA----TGGATTCCA 193936 || || ||||||||||| ||||| | || |||||||| |||| | || || Sbjct 785528 GCTAAATTGTATGGTTACTGGATAGTTGTCAACTATCGTGAAGCATACAACATGTTTGCA 785587 Query 193937 CGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAAC 193996 | | ||||||| | || ||||| ||| || ||||||||||| || ||||| || Sbjct 785588 GTCAA----TGGTATTTTATTTAATCATGAAAGCCCTAGAAGAGGTGAAACTTTTGTTAC 785643 Query 193997 TCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCT 194056 ||||| ||||| |||| | | ||||| ||| | || | | | | | || Sbjct 785644 CCGTAAAATTACTAGAGGTGTTGCCAAGATTTCTATCGGTGAGTTGGACTATATCGAACT 785703 Query 194057 TGGTAATCTTA-ATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGT 194115 ||||| |||| | || || || || ||||| || || || |||||||||||||| |||| Sbjct 785704 AGGTAA-CTTAGACGCCAAAAGAGACTGGGGTCATGCGAAAGATTATGTTGAAGCTATGT 785762 Query 194116 GGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGG 194164 || | ||| | || || || | || || |||| ||||| || || || Sbjct 785763 GGCTCATGCTTCAGCAAGACAAGCCTGAAGATTTCGTGATAGCCACTGG 785811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807548729463960