Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq468 152 5e-32
seq453 152 5e-32
>seq468
Length=1118636
Score = 152 bits (168), Expect = 5e-32
Identities = 381/576 (66%), Gaps = 10/576 (2%)
Strand=Plus/Plus
Query 21463 TTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATT 21522
|||||| | |||||| |||||||||||||| || |||||||| | | || | ||| ||
Sbjct 1106266 TTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTT 1106325
Query 21523 AGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC 21582
||| || |||||||| ||||| | || | |||||| | |||||| || | || || |
Sbjct 1106326 AGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGA 1106385
Query 21583 TCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGA 21642
||||| || || || || ||||| ||||| |||| |||| ||| | | | |||
Sbjct 1106386 GCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAG-AGA 1106444
Query 21643 TTCTT---TATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAAT 21699
| | | | || |||| ||| |||||||| ||||||| || ||| |
Sbjct 1106445 CTGATGGATTTGCA--GTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGAC 1106502
Query 21700 TGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNN 21759
|| ||||||||||| |||||| | | || ||| | |||
Sbjct 1106503 AGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTAT 1106562
Query 21760 NNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACA 21819
|| ||||| ||||| || | ||| || ||||| || ||||| || ||||||||
Sbjct 1106563 CAGTAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACA 1106622
Query 21820 TCTTGCCTCTGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTA 21878
|| || || | | || | || |||| ||||| || ||| || ||||||||||| |
Sbjct 1106623 TCGAGCTTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAA 1106681
Query 21879 TTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTG 21938
| || || ||| | || |||||||| | || | ||||||| ||||| | ||| |
Sbjct 1106682 TACCGTCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATC-G 1106740
Query 21939 TTAA-TTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAG 21997
|||| || ||| || ||||||| ||||| || || |||||| ||||| ||
Sbjct 1106741 TTAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAAC 1106800
Query 21998 CTAGCAATAGCCTTTTTATACATAATCCAGATATCA 22033
|| ||| || |||||||| ||| ||||||
Sbjct 1106801 GAGGCTTCAGCTTTCTTATACATTTCCCAAATATCA 1106836
Score = 86.0 bits (94), Expect = 7e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242
|||||||||| |||| ||| ||||| |||||||| ||||| || || ||||| || ||
Sbjct 1105889 TTTTTTGATATTCACCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 1105948
Query 21243 ATTCCATAAAATCAAATGGATT 21264
||||||||||||||||||||
Sbjct 1105949 GATCCATAAAATCAAATGGATT 1105970
>seq453
Length=2394413
Score = 152 bits (168), Expect = 5e-32
Identities = 381/576 (66%), Gaps = 10/576 (2%)
Strand=Plus/Plus
Query 21463 TTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATT 21522
|||||| | |||||| |||||||||||||| || |||||||| | | || | ||| ||
Sbjct 11718 TTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTT 11777
Query 21523 AGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC 21582
||| || |||||||| ||||| | || | |||||| | |||||| || | || || |
Sbjct 11778 AGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGA 11837
Query 21583 TCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGA 21642
||||| || || || || ||||| ||||| |||| |||| ||| | | | |||
Sbjct 11838 GCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAG-AGA 11896
Query 21643 TTCTT---TATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAAT 21699
| | | | || |||| ||| |||||||| ||||||| || ||| |
Sbjct 11897 CTGATGGATTTGCA--GTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGAC 11954
Query 21700 TGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNN 21759
|| ||||||||||| |||||| | | || ||| | |||
Sbjct 11955 AGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTAT 12014
Query 21760 NNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACA 21819
|| ||||| ||||| || | ||| || ||||| || ||||| || ||||||||
Sbjct 12015 CAGTAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACA 12074
Query 21820 TCTTGCCTCTGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTA 21878
|| || || | | || | || |||| ||||| || ||| || ||||||||||| |
Sbjct 12075 TCGAGCTTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAA 12133
Query 21879 TTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTG 21938
| || || ||| | || |||||||| | || | ||||||| ||||| | ||| |
Sbjct 12134 TACCGTCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATC-G 12192
Query 21939 TTAA-TTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAG 21997
|||| || ||| || ||||||| ||||| || || |||||| ||||| ||
Sbjct 12193 TTAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAAC 12252
Query 21998 CTAGCAATAGCCTTTTTATACATAATCCAGATATCA 22033
|| ||| || |||||||| ||| ||||||
Sbjct 12253 GAGGCTTCAGCTTTCTTATACATTTCCCAAATATCA 12288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531896538144840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |