Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq468 152 5e-32 seq453 152 5e-32 >seq468 Length=1118636 Score = 152 bits (168), Expect = 5e-32 Identities = 381/576 (66%), Gaps = 10/576 (2%) Strand=Plus/Plus Query 21463 TTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATT 21522 |||||| | |||||| |||||||||||||| || |||||||| | | || | ||| || Sbjct 1106266 TTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTT 1106325 Query 21523 AGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC 21582 ||| || |||||||| ||||| | || | |||||| | |||||| || | || || | Sbjct 1106326 AGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGA 1106385 Query 21583 TCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGA 21642 ||||| || || || || ||||| ||||| |||| |||| ||| | | | ||| Sbjct 1106386 GCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAG-AGA 1106444 Query 21643 TTCTT---TATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAAT 21699 | | | | || |||| ||| |||||||| ||||||| || ||| | Sbjct 1106445 CTGATGGATTTGCA--GTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGAC 1106502 Query 21700 TGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNN 21759 || ||||||||||| |||||| | | || ||| | ||| Sbjct 1106503 AGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTAT 1106562 Query 21760 NNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACA 21819 || ||||| ||||| || | ||| || ||||| || ||||| || |||||||| Sbjct 1106563 CAGTAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACA 1106622 Query 21820 TCTTGCCTCTGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTA 21878 || || || | | || | || |||| ||||| || ||| || ||||||||||| | Sbjct 1106623 TCGAGCTTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAA 1106681 Query 21879 TTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTG 21938 | || || ||| | || |||||||| | || | ||||||| ||||| | ||| | Sbjct 1106682 TACCGTCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATC-G 1106740 Query 21939 TTAA-TTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAG 21997 |||| || ||| || ||||||| ||||| || || |||||| ||||| || Sbjct 1106741 TTAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAAC 1106800 Query 21998 CTAGCAATAGCCTTTTTATACATAATCCAGATATCA 22033 || ||| || |||||||| ||| |||||| Sbjct 1106801 GAGGCTTCAGCTTTCTTATACATTTCCCAAATATCA 1106836 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 |||||||||| |||| ||| ||||| |||||||| ||||| || || ||||| || || Sbjct 1105889 TTTTTTGATATTCACCAACCCTTTTCTCGAAAAAGTTTGTTTTACCATCCAAAGAAATGT 1105948 Query 21243 ATTCCATAAAATCAAATGGATT 21264 |||||||||||||||||||| Sbjct 1105949 GATCCATAAAATCAAATGGATT 1105970 >seq453 Length=2394413 Score = 152 bits (168), Expect = 5e-32 Identities = 381/576 (66%), Gaps = 10/576 (2%) Strand=Plus/Plus Query 21463 TTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATT 21522 |||||| | |||||| |||||||||||||| || |||||||| | | || | ||| || Sbjct 11718 TTTAAATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTT 11777 Query 21523 AGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC 21582 ||| || |||||||| ||||| | || | |||||| | |||||| || | || || | Sbjct 11778 AGAGAAAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGA 11837 Query 21583 TCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGA 21642 ||||| || || || || ||||| ||||| |||| |||| ||| | | | ||| Sbjct 11838 GCCTGAGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAG-AGA 11896 Query 21643 TTCTT---TATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAAT 21699 | | | | || |||| ||| |||||||| ||||||| || ||| | Sbjct 11897 CTGATGGATTTGCA--GTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGAC 11954 Query 21700 TGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNN 21759 || ||||||||||| |||||| | | || ||| | ||| Sbjct 11955 AGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTAT 12014 Query 21760 NNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACA 21819 || ||||| ||||| || | ||| || ||||| || ||||| || |||||||| Sbjct 12015 CAGTAGGCTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACA 12074 Query 21820 TCTTGCCTCTGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTA 21878 || || || | | || | || |||| ||||| || ||| || ||||||||||| | Sbjct 12075 TCGAGCTTCGGTAATCTGGATATCACGAAT-AAATCTTTCAGCTAAATTTTCATTTACAA 12133 Query 21879 TTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTG 21938 | || || ||| | || |||||||| | || | ||||||| ||||| | ||| | Sbjct 12134 TACCGTCTGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATC-G 12192 Query 21939 TTAA-TTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAG 21997 |||| || ||| || ||||||| ||||| || || |||||| ||||| || Sbjct 12193 TTAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAAC 12252 Query 21998 CTAGCAATAGCCTTTTTATACATAATCCAGATATCA 22033 || ||| || |||||||| ||| |||||| Sbjct 12253 GAGGCTTCAGCTTTCTTATACATTTCCCAAATATCA 12288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531896538144840