Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq442 580 1e-160 seq468 253 3e-62 seq453 253 3e-62 >seq442 Length=7801961 Score = 580 bits (642), Expect = 1e-160 Identities = 1228/1813 (68%), Gaps = 37/1813 (2%) Strand=Plus/Plus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || ||||| | |||| |||||||| || || || || || || ||| || || ||| Sbjct 3251626 GCAGGTTTACTTCGTAAGTAGTACATGCCTGTCTTAAGCCCAAGCTCCCAGCCATAGAAA 3251685 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 ||||| || | ||| | | | || | | | ||| ||||| | |||||||||| Sbjct 3251686 TGCATCGAGGTCATTTTAGCAACAGAAGGTCTTTCAAAATGAATATTTAAAGATTGACTT 3251745 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| || || ||||| | || |||||||||| | || | ||||| ||||||||| Sbjct 3251746 TGATCAATAAAAGCTCCACGTTCAGCAGCCATTTCCAGAATATTTTTTTGAGGAATTTCC 3251805 Query 62196 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGAT 62252 |||| |||| ||| | | |||||||||| ||||| | | | | |||||||| Sbjct 3251806 CAAACAGTTCGATACAATTGCTTAATATCCTCTGGGATACCTTCAATAGCTTGAATGGAG 3251865 Query 62253 CCACCATCTGCCATAATCCTATTCT-TGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62311 || | | |||||| | |||| | || || |||||||| | || || || || || Sbjct 3251866 CCTCTGTGATAAATAATC-TGTTCTCTCATGTCTTCATTCCAAAGTTCTCGATCAGTCAA 3251924 Query 62312 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62371 | || | | ||||| | ||||||||||||||||| ||||| | |||| ||||| || Sbjct 3251925 ATCTTTGACAAGATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATA 3251984 Query 62372 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62431 || ||||| ||||| ||||| | || || || || |||||||| |||||||||||||| Sbjct 3251985 GATGTTACTTGTATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGC 3252044 Query 62432 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 62489 || ||||| || || | || | ||| |||| |||||| ||||| | |||||| Sbjct 3252045 TGTAGGCATGGGCGCTAATAACAGACTGTTTCGAAGACC--ATGTTTAGCAATTTTACTC 3252102 Query 62490 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 62549 || || | ||| | ||| |||| || ||| || ||| | | Sbjct 3252103 TTCAGCTCTGTCCAGTCCCACAGATTAGATGGTGTTACACCCCACATATCATATTGCAAA 3252162 Query 62550 ATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGT 62609 || || ||| ||| |||||| |||| || ||||| ||||| | ||||| || Sbjct 3252163 ATCCCTTTAGAAGCGGGAGATCCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGC 3252222 Query 62610 TCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCT 62669 |||||||| || || | || || ||||| || || || ||||| | ||| | | Sbjct 3252223 TCACAACTTGCTTCGAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTA 3252282 Query 62670 TGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGA 62729 | ||||| |||| ||||||||||| | | | || ||| ||||| ||||| |||||| Sbjct 3252283 CGAGCTTCTGGGCTGTCAAATGGATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGA 3252342 Query 62730 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAG-CTTCTGGAATAGGATA 62788 || || | || ||||||| || | || || || || || |||| | |||||| Sbjct 3252343 ACTCCTAAGCCAATAGGTCGATTCTTTTTGTTTGA-ATAAGAGGCTTCCTTTAGAGGATA 3252401 Query 62789 ATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTT 62845 | | || || || |||||||| || | ||||| |||| ||||| || || || Sbjct 3252402 AAAGTTGATCTCAATAATTTTGTTTAAATTTCGTGTGACCG---CTTTGGTAACTTCTTT 3252458 Query 62846 CAGTTTGAGAAAATCAAATC---GCCCATCTATTACAAACATGTTCAAGGCAACAGATGC 62902 ||| | |||||||||| | | || | ||||| | |||||||| | ||| || Sbjct 3252459 GAGTCTTGCAAAATCAAATTTTTGTTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGC 3252518 Query 62903 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 62962 ||||||||||| || || |||| || | ||||| | || |||||||| ||||| Sbjct 3252519 AAGATTACAAACAGCAACTTCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATT 3252578 Query 62963 ACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 63022 ||||||||| ||||| | ||||| ||||| ||||| ||||| ||| ||||| Sbjct 3252579 TGAACACTTGATGGTTCCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATA 3252638 Query 63023 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 63082 ||| || | ||| ||||||||| ||||| | || || || |||| ||| | |||| Sbjct 3252639 AAGCATATACGGAACACCAGTTTCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCG 3252698 Query 63083 AGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGT-TCGA 63141 ||| |||||| |||||||| ||||| ||| ||| ||| || | | | || Sbjct 3252699 AGCTTTTATTTGCTGATTGTATCTTTTTTCTTCTTCATATTTAACATA-AAGCTTATTGA 3252757 Query 63142 ACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACT 63201 | || ||||| |||| | | | |||||||||| | |||||||| | |||| Sbjct 3252758 ATTCATCTCCATAAACTTCGAATAGACCAGGACATTTGTGTGGACACATAAGACTCCACA 3252817 Query 63202 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63261 | | || | || ||||| | |||||| |||| ||| | ||||||||||| ||| | || Sbjct 3252818 TTTCATCTTTTTTAACTCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAAT 3252877 Query 63262 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAG-ATCGAGGAACGCCATAAT 63319 ||| | ||| || || || || || || ||| ||||| || ||||| | | | Sbjct 3252878 CTCGAGCTCTCATCTCTTCTTTACCAGTGTTTTTTCTTAAGCAT--AGGAAATCAAAGAC 3252935 Query 63320 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAA-CTCCAGGCCGTTTGTTTCCTCCCT 63378 ||||| |||||| || || | || || || |||| |||| || ||||| || || | Sbjct 3252936 ATCAGCATGCCAAGGCTCAATATAAATAGC-ATAAGCTCCTGGTCGTTTA---CCCCCTT 3252991 Query 63379 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATA 63438 | | | || | ||| | | |||| | | | ||| ||| || | | ||| | || | Sbjct 3252992 GGTTGACATAACGAGCAGATTCATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGA 3253051 Query 63439 TACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACC 63496 |||||| || || ||| | |||| | || |||||| | || |||| |||| Sbjct 3253052 AACCATTTGTCCCTCTGATTCGGGTTCCTTTCGCTCGAATACAATGAACATTGA--GACC 3253109 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 ||||| || || |||||| || || || ||| || || || | || || || Sbjct 3253110 AATTCCACCAGCATATTTAGAAATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTC 3253169 Query 63557 TATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63615 || ||||| || |||| | ||| |||||||| ||||| | || | ||| || | Sbjct 3253170 AATACTATCTTCCCTCATTGATAAA-AGAAAACAACTAGATAGCTGAGGTCGAGGTGTAC 3253228 Query 63616 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63675 | |||||||| | |||||||||||| || ||||||||||||| ||| | || | ||| | Sbjct 3253229 CAGCATTAAAAAGGGTAGGAGAAGCATGTGTAAACCATTTTTGAGACATTAATTCGTAGG 3253288 Query 63676 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63735 ||| | ||||| || ||||| || ||||||||| || || || | ||||| ||| | Sbjct 3253289 TCTGTAAGGCTGATTCAATATCAGATCCATGAATTCCAACAGCAACTCTCATTAGCATAT 3253348 Query 63736 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63795 | || || |||||||| | || || ||||| | | ||| ||| ||||||| |||| Sbjct 3253349 GTTGCGGCCTTTCAACTACTTTACCATTGATTTTAAGAAGGTATGATCTTTCCAAGGTTT 3253408 Query 63796 TAAAACCAAAATA 63808 | ||||||||||| Sbjct 3253409 TGAAACCAAAATA 3253421 >seq468 Length=1118636 Score = 253 bits (280), Expect = 3e-62 Identities = 528/780 (68%), Gaps = 5/780 (1%) Strand=Plus/Plus Query 33121 AATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTC 33180 |||||| | |||||| || || || || || || ||| |||||||| ||| Sbjct 1106096 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 1106155 Query 33181 ATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCA 33240 |||||||| || |||||| | ||| | || | ||||| || || || || ||| Sbjct 1106156 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 1106215 Query 33241 TCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATC 33300 ||| | || | || ||| |||||||||| | | | || |||||| | | Sbjct 1106216 TCTCGCACTATTTCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAAC 1106275 Query 33301 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 33360 ||||| || ||||| || || | || || |||| | || |||||||| || || || Sbjct 1106276 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 1106335 Query 33361 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAG 33420 | || ||||| ||||||||||||||||||||||| || | ||||| || || || || Sbjct 1106336 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 1106395 Query 33421 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCAT- 33478 ||||| ||||| || ||||||||||| | ||| || || || | | | || | Sbjct 1106396 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGATTT 1106455 Query 33479 GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | | |||| ||| ||||| || ||||| | ||||| || | ||||| || || Sbjct 1106456 GCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCT 1106515 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 || || ||| | | | | | ||| | | ||||| || |||| || || ||| Sbjct 1106516 TTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTAC 1106575 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || | || ||||| || || ||||| || || ||||||| ||| |||||| Sbjct 1106576 ATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTA 1106635 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 ||||| | || | ||||| ||| || ||||||||||| || || ||||| ||| Sbjct 1106636 ATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCA 1106695 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCA 33776 | || || ||||| |||| | ||||||| ||| || | || | || ||| ||| Sbjct 1106696 GAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT-TAAGCTTAGCCCA 1106754 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 ||| | | |||| ||||| || || ||||| || ||||| || || || || || || Sbjct 1106755 GTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTT 1106814 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 |||||||| | ||| || ||| ||| | || ||||| | |||||| | ||| ||||| Sbjct 1106815 CTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGATT 1106874 >seq453 Length=2394413 Score = 253 bits (280), Expect = 3e-62 Identities = 528/780 (68%), Gaps = 5/780 (1%) Strand=Plus/Plus Query 33121 AATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTC 33180 |||||| | |||||| || || || || || || ||| |||||||| ||| Sbjct 11548 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 11607 Query 33181 ATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCA 33240 |||||||| || |||||| | ||| | || | ||||| || || || || ||| Sbjct 11608 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 11667 Query 33241 TCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATC 33300 ||| | || | || ||| |||||||||| | | | || |||||| | | Sbjct 11668 TCTCGCACTATTTCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAAC 11727 Query 33301 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 33360 ||||| || ||||| || || | || || |||| | || |||||||| || || || Sbjct 11728 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 11787 Query 33361 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAG 33420 | || ||||| ||||||||||||||||||||||| || | ||||| || || || || Sbjct 11788 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 11847 Query 33421 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCAT- 33478 ||||| ||||| || ||||||||||| | ||| || || || | | | || | Sbjct 11848 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGATTT 11907 Query 33479 GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | | |||| ||| ||||| || ||||| | ||||| || | ||||| || || Sbjct 11908 GCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCT 11967 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 || || ||| | | | | | ||| | | ||||| || |||| || || ||| Sbjct 11968 TTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTAC 12027 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || | || ||||| || || ||||| || || ||||||| ||| |||||| Sbjct 12028 ATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTA 12087 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 ||||| | || | ||||| ||| || ||||||||||| || || ||||| ||| Sbjct 12088 ATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCA 12147 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCA 33776 | || || ||||| |||| | ||||||| ||| || | || | || ||| ||| Sbjct 12148 GAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT-TAAGCTTAGCCCA 12206 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 ||| | | |||| ||||| || || ||||| || ||||| || || || || || || Sbjct 12207 GTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTT 12266 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 |||||||| | ||| || ||| ||| | || ||||| | |||||| | ||| ||||| Sbjct 12267 CTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGATT 12326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622942208635560