Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq442 93.3 1e-13
seq443 84.2 6e-11
>seq442
Length=7801961
Score = 93.3 bits (102), Expect = 1e-13
Identities = 296/448 (66%), Gaps = 22/448 (5%)
Strand=Plus/Minus
Query 364720 AAGCATGGTACTCGCAACTCCCTCGTTAC-AGCGCCCATGCCCACGGCTTCTACTGCACA 364778
|| |||||| ||| ||| || |||| |||||||||||| || || || ||||| ||
Sbjct 3252089 AAACATGGTCTTCGAAACAGTCT-GTTATTAGCGCCCATGCCTACAGCATCAACTGCTCA 3252031
Query 364779 GATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGT 364838
||| | || |||||||| | | ||||| | |||||| || | ||| | || || ||
Sbjct 3252030 GATTTTGGGGAACAACGAATCTATTGAACCATATACAAGTAACATCTATACTCGACGAGT 3251971
Query 364839 TCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGG 364898
|||||| || ||||||| |||||||| | | || ||||| ||| | | || || |
Sbjct 3251970 TCTTTCTGGTGAATTTCAAGTAGTTAACCACCATCTTGTCAAAGATTTGACTGATCGAGA 3251911
Query 364899 GCTGTGGGGTGACAGCATGA-AGAAC----TATATCATCGCCGCTAATGGTTCTGTGCAG 364953
|| ||| ||| ||||| ||||| ||| | ||| | | || || | ||
Sbjct 3251910 ACTTTGGAATGAAGACATGAGAGAACAGATTAT-TTATCAC----AGAGGCTCCATTCAA 3251856
Query 364954 AACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC 365013
||| ||| | ||||| ||| | |||| | || ||| || ||||||||| |
Sbjct 3251855 GCTATTGAAGGTATCCCAGAGGATATTAAGCAATTGTATCGAACTGTTTGGGAAATTCCT 3251796
Query 365014 ATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCG 365073
|| | | | || ||||| || || || || |||||||| ||| || || ||
Sbjct 3251795 CAAAAAAATATTCTGGAAATGGCTGCTGAACGTGGAGCTTTTATTGATCAAAGTCAATC- 3251737
Query 365074 TTTAACGTATTCATGACTCAGCCA-ACCTCC----GCCAAGCTTACATCCATGCATTTCT 365128
||||| ||||||| | | | |||| | || || | || || ||||||||||
Sbjct 3251736 TTTAA-ATATTCAT---TTTGAAAGACCTTCTGTTGCTAAAATGACCTCGATGCATTTCT 3251681
Query 365129 ACGGGTGGAAATCCGGTCTTAAGACAGG 365156
| || ||| | || |||||||||||
Sbjct 3251680 ATGGCTGGGAGCTTGGGCTTAAGACAGG 3251653
>seq443
Length=6836010
Score = 84.2 bits (92), Expect = 6e-11
Identities = 132/181 (73%), Gaps = 10/181 (6%)
Strand=Plus/Minus
Query 111360 GAAGAACTTCTGTGGTTTATTC--GCGGAAGTACAAAT-GCAAATGAACTTGCAGCAAAA 111416
|| |||||||||||||| ||| | |||| ||||| ||||| | ||||| ||||
Sbjct 506154 GAGGAACTTCTGTGGTTCATTAAAGGGGAA--ACAAACAGCAAAATA--TTGCAAGAAAA 506099
Query 111417 AAT-GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGT 111475
| || | |||||||||| |||||||| || ||| ||||||| |||||| || |
Sbjct 506098 AGGAGTTCATATTTGGGATGCTAATGGATCGAAAGAATTTTTAGATTCTGTTGGT-TTCT 506040
Query 111476 C-GACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTG 111534
| || | |||||||| ||| | || || |||| || ||||||||||| || | ||||
Sbjct 506039 CAGATAGAGAAGAAGGAGATTTAGGTCCTATTTATGGGTTTCAATGGCGACATTGGGGTG 505980
Query 111535 C 111535
|
Sbjct 505979 C 505979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303342895801262
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |