Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq442 93.3 1e-13 seq443 84.2 6e-11 >seq442 Length=7801961 Score = 93.3 bits (102), Expect = 1e-13 Identities = 296/448 (66%), Gaps = 22/448 (5%) Strand=Plus/Minus Query 364720 AAGCATGGTACTCGCAACTCCCTCGTTAC-AGCGCCCATGCCCACGGCTTCTACTGCACA 364778 || |||||| ||| ||| || |||| |||||||||||| || || || ||||| || Sbjct 3252089 AAACATGGTCTTCGAAACAGTCT-GTTATTAGCGCCCATGCCTACAGCATCAACTGCTCA 3252031 Query 364779 GATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGT 364838 ||| | || |||||||| | | ||||| | |||||| || | ||| | || || || Sbjct 3252030 GATTTTGGGGAACAACGAATCTATTGAACCATATACAAGTAACATCTATACTCGACGAGT 3251971 Query 364839 TCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGG 364898 |||||| || ||||||| |||||||| | | || ||||| ||| | | || || | Sbjct 3251970 TCTTTCTGGTGAATTTCAAGTAGTTAACCACCATCTTGTCAAAGATTTGACTGATCGAGA 3251911 Query 364899 GCTGTGGGGTGACAGCATGA-AGAAC----TATATCATCGCCGCTAATGGTTCTGTGCAG 364953 || ||| ||| ||||| ||||| ||| | ||| | | || || | || Sbjct 3251910 ACTTTGGAATGAAGACATGAGAGAACAGATTAT-TTATCAC----AGAGGCTCCATTCAA 3251856 Query 364954 AACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC 365013 ||| ||| | ||||| ||| | |||| | || ||| || ||||||||| | Sbjct 3251855 GCTATTGAAGGTATCCCAGAGGATATTAAGCAATTGTATCGAACTGTTTGGGAAATTCCT 3251796 Query 365014 ATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCG 365073 || | | | || ||||| || || || || |||||||| ||| || || || Sbjct 3251795 CAAAAAAATATTCTGGAAATGGCTGCTGAACGTGGAGCTTTTATTGATCAAAGTCAATC- 3251737 Query 365074 TTTAACGTATTCATGACTCAGCCA-ACCTCC----GCCAAGCTTACATCCATGCATTTCT 365128 ||||| ||||||| | | | |||| | || || | || || |||||||||| Sbjct 3251736 TTTAA-ATATTCAT---TTTGAAAGACCTTCTGTTGCTAAAATGACCTCGATGCATTTCT 3251681 Query 365129 ACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | || ||| | || ||||||||||| Sbjct 3251680 ATGGCTGGGAGCTTGGGCTTAAGACAGG 3251653 >seq443 Length=6836010 Score = 84.2 bits (92), Expect = 6e-11 Identities = 132/181 (73%), Gaps = 10/181 (6%) Strand=Plus/Minus Query 111360 GAAGAACTTCTGTGGTTTATTC--GCGGAAGTACAAAT-GCAAATGAACTTGCAGCAAAA 111416 || |||||||||||||| ||| | |||| ||||| ||||| | ||||| |||| Sbjct 506154 GAGGAACTTCTGTGGTTCATTAAAGGGGAA--ACAAACAGCAAAATA--TTGCAAGAAAA 506099 Query 111417 AAT-GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGT 111475 | || | |||||||||| |||||||| || ||| ||||||| |||||| || | Sbjct 506098 AGGAGTTCATATTTGGGATGCTAATGGATCGAAAGAATTTTTAGATTCTGTTGGT-TTCT 506040 Query 111476 C-GACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTG 111534 | || | |||||||| ||| | || || |||| || ||||||||||| || | |||| Sbjct 506039 CAGATAGAGAAGAAGGAGATTTAGGTCCTATTTATGGGTTTCAATGGCGACATTGGGGTG 505980 Query 111535 C 111535 | Sbjct 505979 C 505979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303342895801262