Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq442 107 2e-18
seq444 105 6e-18
>seq442
Length=7801961
Score = 107 bits (118), Expect = 2e-18
Identities = 253/375 (67%), Gaps = 9/375 (2%)
Strand=Plus/Plus
Query 132193 GACGAGATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATT 132252
||| ||||| || || |||| |||| ||||||| || | |||| ||| || | ||
Sbjct 3251931 GACAAGATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATAGATGTT 3251990
Query 132253 ACTAGTAAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGG 132312
||| ||| | || || | ||||||||||| ||||| || ||||| || | ||| || ||
Sbjct 3251991 ACTTGTATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGG 3252050
Query 132313 CATGTAGGC-AATCA-ATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGC 132370
|||| || ||| | | | || || || || || ||| | || |||| | || |||
Sbjct 3252051 CATGGGCGCTAATAACAGACTG--TTTCGAAGACCATGTTTAGCAATTTTACTCTTCAGC 3252108
Query 132371 TCGTCCCAGTTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGA 132430
|| ||||| |||||| ||| ||| | | | | ||||| |||| | || |||
Sbjct 3252109 TCTGTCCAGTCCCACAG---ATTAGATGGTGTTACACCCCACATATCATATTGCAAAATC 3252165
Query 132431 CCGCTACTTGCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCT 132490
|| || || |||||||| ||||| ||||| | |||| || || || || ||
Sbjct 3252166 CCTTTAGAAGCGGGAGATCCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGCTCA 3252225
Query 132491 ATGCTCTGACTC-AGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCT 132549
|| || || || || |||||||| || ||||| |||||| |||||||| |
Sbjct 3252226 CAACT-TGCTTCGAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTACG 3252284
Query 132550 TGCTTGTTGACTGTC 132564
|||| | | |||||
Sbjct 3252285 AGCTTCTGGGCTGTC 3252299
>seq444
Length=5217058
Score = 105 bits (116), Expect = 6e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || || | ||||||||| | || ||| | || || || ||| |
Sbjct 3542603 ATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAA-CCATC 3542545
Query 24051 G-ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
| |||| || || | || ||| ||||| ||||| ||||| || || ||||||||
Sbjct 3542544 GGACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGATCA 3542485
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
|||| | |||| | || || || || || ||||||| | | | | |||||||| ||
Sbjct 3542484 ACAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGCGATTACAA 3542425
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206
|||||||||||| ||||| |||| || || ||| ||
Sbjct 3542424 CATTCAAAAAGAGTCTACCCTTCACTTGGTCTTACGA 3542388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429932641259355
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |