Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq442 107 2e-18 seq444 105 6e-18 >seq442 Length=7801961 Score = 107 bits (118), Expect = 2e-18 Identities = 253/375 (67%), Gaps = 9/375 (2%) Strand=Plus/Plus Query 132193 GACGAGATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATT 132252 ||| ||||| || || |||| |||| ||||||| || | |||| ||| || | || Sbjct 3251931 GACAAGATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATAGATGTT 3251990 Query 132253 ACTAGTAAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGG 132312 ||| ||| | || || | ||||||||||| ||||| || ||||| || | ||| || || Sbjct 3251991 ACTTGTATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGG 3252050 Query 132313 CATGTAGGC-AATCA-ATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGC 132370 |||| || ||| | | | || || || || || ||| | || |||| | || ||| Sbjct 3252051 CATGGGCGCTAATAACAGACTG--TTTCGAAGACCATGTTTAGCAATTTTACTCTTCAGC 3252108 Query 132371 TCGTCCCAGTTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGA 132430 || ||||| |||||| ||| ||| | | | | ||||| |||| | || ||| Sbjct 3252109 TCTGTCCAGTCCCACAG---ATTAGATGGTGTTACACCCCACATATCATATTGCAAAATC 3252165 Query 132431 CCGCTACTTGCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCT 132490 || || || |||||||| ||||| ||||| | |||| || || || || || Sbjct 3252166 CCTTTAGAAGCGGGAGATCCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGCTCA 3252225 Query 132491 ATGCTCTGACTC-AGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCT 132549 || || || || || |||||||| || ||||| |||||| |||||||| | Sbjct 3252226 CAACT-TGCTTCGAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTACG 3252284 Query 132550 TGCTTGTTGACTGTC 132564 |||| | | ||||| Sbjct 3252285 AGCTTCTGGGCTGTC 3252299 >seq444 Length=5217058 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||||||| | || ||| | || || || ||| | Sbjct 3542603 ATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAA-CCATC 3542545 Query 24051 G-ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 | |||| || || | || ||| ||||| ||||| ||||| || || |||||||| Sbjct 3542544 GGACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGATCA 3542485 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | |||| | || || || || || ||||||| | | | | |||||||| || Sbjct 3542484 ACAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGCGATTACAA 3542425 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 |||||||||||| ||||| |||| || || ||| || Sbjct 3542424 CATTCAAAAAGAGTCTACCCTTCACTTGGTCTTACGA 3542388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429932641259355