Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq442 625 4e-174 seq468 259 6e-64 seq453 259 6e-64 >seq442 Length=7801961 Score = 625 bits (692), Expect = 4e-174 Identities = 1238/1813 (68%), Gaps = 37/1813 (2%) Strand=Plus/Plus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || ||||| | |||| |||||||| || || || || || || ||| || || ||| Sbjct 3251626 GCAGGTTTACTTCGTAAGTAGTACATGCCTGTCTTAAGCCCAAGCTCCCAGCCATAGAAA 3251685 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 ||||| || | ||| | | | || | | | ||| ||||| | |||||||||| Sbjct 3251686 TGCATCGAGGTCATTTTAGCAACAGAAGGTCTTTCAAAATGAATATTTAAAGATTGACTT 3251745 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| || || ||||| | || |||||||||| | ||| | ||||| ||||||||| Sbjct 3251746 TGATCAATAAAAGCTCCACGTTCAGCAGCCATTTCCAGAATATTTTTTTGAGGAATTTCC 3251805 Query 62051 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGAT 62107 |||| |||| ||| | | |||||||||| ||||| | | | | |||||||| Sbjct 3251806 CAAACAGTTCGATACAATTGCTTAATATCCTCTGGGATACCTTCAATAGCTTGAATGGAG 3251865 Query 62108 CCACCATCTGCCATAATCCTATTCT-TGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62166 || | | |||||| | |||| | || || |||||||| | || || || || || Sbjct 3251866 CCTCTGTGATAAATAATC-TGTTCTCTCATGTCTTCATTCCAAAGTTCTCGATCAGTCAA 3251924 Query 62167 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62226 | || | | ||||| | ||||||||||||||||| ||||| | |||| ||||| || Sbjct 3251925 ATCTTTGACAAGATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATA 3251984 Query 62227 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62286 || ||||| ||||| ||||| | ||| || || || |||||||| |||||||||||||| Sbjct 3251985 GATGTTACTTGTATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGC 3252044 Query 62287 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 62344 || ||||| || || | || | ||| |||| |||||| ||||| | |||||| Sbjct 3252045 TGTAGGCATGGGCGCTAATAACAGACTGTTTCGAAGACC--ATGTTTAGCAATTTTACTC 3252102 Query 62345 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 62404 || || | ||| | ||| |||| || ||| || ||| | | Sbjct 3252103 TTCAGCTCTGTCCAGTCCCACAGATTAGATGGTGTTACACCCCACATATCATATTGCAAA 3252162 Query 62405 ATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGT 62464 || || ||| ||| |||||| |||| || ||||| ||||| | ||||| || Sbjct 3252163 ATCCCTTTAGAAGCGGGAGATCCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGC 3252222 Query 62465 TCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCT 62524 |||||||| || || | || || ||||| || || || ||||| | ||| | | Sbjct 3252223 TCACAACTTGCTTCGAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTA 3252282 Query 62525 TGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 62584 | ||||| |||| ||||||||||| | | | || ||| ||||||||||| |||||| Sbjct 3252283 CGAGCTTCTGGGCTGTCAAATGGATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGA 3252342 Query 62585 ACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAG-CTTCTGGAATAGGATA 62643 || || | || ||||||| || | || || || || || |||| | |||||| Sbjct 3252343 ACTCCTAAGCCAATAGGTCGATTCTTTTTGTTTGA-ATAAGAGGCTTCCTTTAGAGGATA 3252401 Query 62644 ATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTT 62700 | | || || || |||||||| || | ||||| |||| ||||| || || || Sbjct 3252402 AAAGTTGATCTCAATAATTTTGTTTAAATTTCGTGTGACCG---CTTTGGTAACTTCTTT 3252458 Query 62701 CAGTTTGAGAAAATCAAATC---GCCCATCTATTACAAACATGTTCAATGCAACAGATGC 62757 ||| | |||||||||| | | || | ||||| | ||||| || | ||| || Sbjct 3252459 GAGTCTTGCAAAATCAAATTTTTGTTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGC 3252518 Query 62758 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 62817 ||||||||||| || || |||| || | ||||| | || |||||||| ||||| Sbjct 3252519 AAGATTACAAACAGCAACTTCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATT 3252578 Query 62818 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 62877 ||||||||||||||| | ||||| ||||| ||||| ||||| ||| ||||| Sbjct 3252579 TGAACACTTGATGGTTCCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATA 3252638 Query 62878 AAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 62937 ||| || | ||| ||||||||| ||||| | || || || |||| ||| | |||| Sbjct 3252639 AAGCATATACGGAACACCAGTTTCCATCTGGGCATCAATGATTGCTTGCCAAAGAGCTCG 3252698 Query 62938 AGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGT-TCGA 62996 ||| |||||| |||||||| |||||| ||| ||| ||| || | | | || Sbjct 3252699 AGCTTTTATTTGCTGATTGTATCTTTTTTCTTCTTCATATTTAACATA-AAGCTTATTGA 3252757 Query 62997 ACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACT 63056 | || ||||| |||| | | || |||||||||| | |||||||| | |||| Sbjct 3252758 ATTCATCTCCATAAACTTCGAATAGACCAGGACATTTGTGTGGACACATAAGACTCCACA 3252817 Query 63057 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63116 | | || | || ||||| | |||||| |||| ||| | ||||||||||| ||| | || Sbjct 3252818 TTTCATCTTTTTTAACTCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAAT 3252877 Query 63117 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAG-ATCGAGGAACGCCATAAT 63174 ||| | ||| || || || || || || ||| ||||| || ||||| | | | Sbjct 3252878 CTCGAGCTCTCATCTCTTCTTTACCAGTGTTTTTTCTTAAGCAT--AGGAAATCAAAGAC 3252935 Query 63175 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAA-CTCCAGGCCGTTTGTTTCCTCCCT 63233 ||||| |||||| || || | || || || |||| |||| || ||||| || || | Sbjct 3252936 ATCAGCATGCCAAGGCTCAATATAAATAGC-ATAAGCTCCTGGTCGTTTA---CCCCCTT 3252991 Query 63234 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 63293 | | | || | ||| | | |||| | | | ||| ||| || | | ||||| || Sbjct 3252992 GGTTGACATAACGAGCAGATTCATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGA 3253051 Query 63294 TACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACC 63351 |||||| |||||| ||| | |||| | || |||||| | || |||| |||| Sbjct 3253052 AACCATTTGTCCCTCTGATTCGGGTTCCTTTCGCTCGAATACAATGAACATTGA--GACC 3253109 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 ||||| || || |||||| || || || ||| || ||||| | || || || Sbjct 3253110 AATTCCACCAGCATATTTAGAAATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTC 3253169 Query 63412 TATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63470 |||||||| ||| |||| | ||| |||||||| ||||| | || | ||| || | Sbjct 3253170 AATACTATCTTCCCTCATTGATAAA-AGAAAACAACTAGATAGCTGAGGTCGAGGTGTAC 3253228 Query 63471 CCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACG 63530 | |||||||| | |||||||||||| || ||||||||||||| ||| | || | ||| | Sbjct 3253229 CAGCATTAAAAAGGGTAGGAGAAGCATGTGTAAACCATTTTTGAGACATTAATTCGTAGG 3253288 Query 63531 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63590 ||| | ||||| || ||||| || ||||||||| || || || | ||||| ||| | Sbjct 3253289 TCTGTAAGGCTGATTCAATATCAGATCCATGAATTCCAACAGCAACTCTCATTAGCATAT 3253348 Query 63591 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63650 | || || |||||||| | || || ||||| | | ||| ||| ||||||| |||| Sbjct 3253349 GTTGCGGCCTTTCAACTACTTTACCATTGATTTTAAGAAGGTATGATCTTTCCAAGGTTT 3253408 Query 63651 TAAAACCAAAATA 63663 | ||||||||||| Sbjct 3253409 TGAAACCAAAATA 3253421 >seq468 Length=1118636 Score = 259 bits (286), Expect = 6e-64 Identities = 543/801 (68%), Gaps = 9/801 (1%) Strand=Plus/Plus Query 32478 AATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTC 32537 |||||| | |||||| ||||| ||||| || || ||| |||||||| ||| Sbjct 1106096 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 1106155 Query 32538 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 32597 |||||||| || |||||| | ||| | || | ||||| || || || || || Sbjct 1106156 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 1106215 Query 32598 TCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 32655 ||| | || |||| | ||| |||||||||| | | | || |||||| | Sbjct 1106216 TCTCGCACTATT--TCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATA 1106273 Query 32656 TCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 32715 |||||| || ||||| || |||| || || |||| | || | |||||| || || | Sbjct 1106274 ACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAG 1106333 Query 32716 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 32775 | | || ||||| ||||||||||||||||||||||| || | || || || || || | Sbjct 1106334 TTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGA 1106393 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCA 32834 | || || ||||| || ||||||||||| | ||| || || || | | | || Sbjct 1106394 AAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGAT 1106453 Query 32835 T-GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 | | | |||| ||| ||||| || ||||| | ||||| || | || || |||| Sbjct 1106454 TTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAG 1106513 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | || || ||| | | | | | ||| | | || || || |||| || || | Sbjct 1106514 CTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGT 1106573 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 |||| || || || | || ||||| || |||||||| || || || |||| ||| |||| Sbjct 1106574 ACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGG 1106633 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 ||||||| | || | ||||| ||| |||||||||||||| || || ||||| || Sbjct 1106634 TAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGG 1106693 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTC 33131 | | || || ||||| |||| | ||||||| ||| || | || | || ||| | Sbjct 1106694 CAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT-TAAGCTTAGCC 1106752 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 || ||| | | |||| ||||| || || ||||| || ||||| || || || || || Sbjct 1106753 CAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCT 1106812 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 33251 || |||||||| | ||| || ||| |||| | ||| || || | |||||| | ||| ||| Sbjct 1106813 TTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGA 1106872 Query 33252 TTTTTTGCAAGGATTGGTTCC 33272 || | | ||| | ||||||| Sbjct 1106873 TTCTCTCGAAGTAATGGTTCC 1106893 >seq453 Length=2394413 Score = 259 bits (286), Expect = 6e-64 Identities = 543/801 (68%), Gaps = 9/801 (1%) Strand=Plus/Plus Query 32478 AATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTC 32537 |||||| | |||||| ||||| ||||| || || ||| |||||||| ||| Sbjct 11548 AATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTC 11607 Query 32538 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 32597 |||||||| || |||||| | ||| | || | ||||| || || || || || Sbjct 11608 ATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCA 11667 Query 32598 TCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 32655 ||| | || |||| | ||| |||||||||| | | | || |||||| | Sbjct 11668 TCTCGCACTATT--TCTTGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATA 11725 Query 32656 TCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 32715 |||||| || ||||| || |||| || || |||| | || | |||||| || || | Sbjct 11726 ACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAG 11785 Query 32716 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 32775 | | || ||||| ||||||||||||||||||||||| || | || || || || || | Sbjct 11786 TTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGA 11845 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCA 32834 | || || ||||| || ||||||||||| | ||| || || || | | | || Sbjct 11846 AAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAGAGACTGATGGAT 11905 Query 32835 T-GTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 | | | |||| ||| ||||| || ||||| | ||||| || | || || |||| Sbjct 11906 TTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAG 11965 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | || || ||| | | | | | ||| | | || || || |||| || || | Sbjct 11966 CTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGT 12025 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 |||| || || || | || ||||| || |||||||| || || || |||| ||| |||| Sbjct 12026 ACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGG 12085 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 ||||||| | || | ||||| ||| |||||||||||||| || || ||||| || Sbjct 12086 TAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGG 12145 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTC 33131 | | || || ||||| |||| | ||||||| ||| || | || | || ||| | Sbjct 12146 CAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGT-TAAGCTTAGCC 12204 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 || ||| | | |||| ||||| || || ||||| || ||||| || || || || || Sbjct 12205 CAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCT 12264 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 33251 || |||||||| | ||| || ||| |||| | ||| || || | |||||| | ||| ||| Sbjct 12265 TTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGA 12324 Query 33252 TTTTTTGCAAGGATTGGTTCC 33272 || | | ||| | ||||||| Sbjct 12325 TTCTCTCGAAGTAATGGTTCC 12345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633626923023600