Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq444 122 8e-23
>seq444
Length=5217058
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || ||||| ||| | || ||||| |||| ||| | || || || | ||
Sbjct 3542028 AATGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTC 3541969
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||| ||||| || |||| |||||| ||||||||||| || |||||||||||
Sbjct 3541968 TGATACTATTGAAAACGTGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACCA 3541909
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || || || || ||||| | || || | ||| ||| | | ||||| ||
Sbjct 3541908 ACAACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACTCTCAGTGATTATAA 3541849
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207
||||||||||||||| || || || || ||
Sbjct 3541848 TATTCAAAAAGAATCTACCCTTCACTTGGT 3541819
Score = 109 bits (120), Expect = 5e-19
Identities = 153/212 (72%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || |||||| | || || ||| ||||||| | || || || | ||
Sbjct 3542603 ATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCATCG 3542544
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||||| || | || |||| || | || ||||| ||||| || ||||| ||
Sbjct 3542543 GACACTATTGAA--AATGTTAAAGCCAAGATCCAA-GACAAGGAAGGTATCCCACCCGAT 3542487
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | || || || || ||||| | ||||||| || || || ||||||||
Sbjct 3542486 CAACAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGCGATTAC 3542427
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207
|| ||||||||||| || || || || || ||
Sbjct 3542426 AACATTCAAAAAGAGTCTACCCTTCACTTGGT 3542395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433324614760415
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |