Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq468 316 2e-81 seq453 316 2e-81 seq457 111 2e-19 seq447 102 9e-17 >seq468 Length=1118636 Score = 316 bits (350), Expect = 2e-81 Identities = 549/790 (69%), Gaps = 10/790 (1%) Strand=Plus/Plus Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA 92980 ||||| || || ||||| || ||||| || | ||||| | |||||||||| ||| Sbjct 1106108 AATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCTATGAGA 1106167 Query 92981 CGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATT 93040 || || | || ||||| || || | | ||||||| | || || ||| || ||| Sbjct 1106168 GAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGCACTATT 1106227 Query 93041 TCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAA 93099 ||| | | | | || | ||| ||| || ||||| || | | || || ||||| Sbjct 1106228 TCT-TGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAACAAACAGGCAAA 1106286 Query 93100 GTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAA 93159 || |||||| ||||| ||||| || || | || || ||| ||||||||||| | Sbjct 1106287 ATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCTGGCAT 1106346 Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219 ||| || || || || |||||||| || | || ||| || || ||||| |||||||| Sbjct 1106347 CAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATACCTTC 1106406 Query 93220 CACGGCTGCAAATGCCA-CAATACGTTCGGCAAAATTTGCGGA---ATTACTGCTGATCC 93275 || |||||| || | |||| | |||||||||| | || ||| ||| | ||| Sbjct 1106407 AACACATGCAAAGGCAATCAAT-CTTTCGGCAAAAGAGACTGATGGATT--TGCAG-TCC 1106462 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | |||| ||||| || || |||| || ||| || | ||||| ||||| || || | Sbjct 1106463 AGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTGAAAA 1106522 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | | || |||| ||| | ||| | ||||| || || || | || ||||| |||| Sbjct 1106523 GAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTACATCTCAG 1106582 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | || |||||||| || |||||||| || || || ||||||| |||||| || ||||| | Sbjct 1106583 AGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTAATCTGGA 1106642 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 || || |||||| || | | ||||||||| || ||||| || || || | || | Sbjct 1106643 TATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCAGAGAAGA 1106702 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATA 93575 | ||||| | || | |||||||| || ||||| ||||||||| |||| || | || Sbjct 1106703 ATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAGCCCAGTCAGTTA 1106762 Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 |||| || | || || ||||| |||||||| ||||| ||||| ||||| || |||| Sbjct 1106763 AATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTTCTTATACA 1106822 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695 | ||||| || || |||| | ||| || || | |||||||||||||| || ||| | Sbjct 1106823 TTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGATTCTCTCGAA 1106882 Query 93696 GTAACGGCTC 93705 |||| || || Sbjct 1106883 GTAATGGTTC 1106892 >seq453 Length=2394413 Score = 316 bits (350), Expect = 2e-81 Identities = 549/790 (69%), Gaps = 10/790 (1%) Strand=Plus/Plus Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA 92980 ||||| || || ||||| || ||||| || | ||||| | |||||||||| ||| Sbjct 11560 AATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCTATGAGA 11619 Query 92981 CGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATT 93040 || || | || ||||| || || | | ||||||| | || || ||| || ||| Sbjct 11620 GAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGCACTATT 11679 Query 93041 TCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAA 93099 ||| | | | | || | ||| ||| || ||||| || | | || || ||||| Sbjct 11680 TCT-TGAATAATTTTTTCACTCGGTCTTTTAACAACATATTTAAATAACAAACAGGCAAA 11738 Query 93100 GTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAA 93159 || |||||| ||||| ||||| || || | || || ||| ||||||||||| | Sbjct 11739 ATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCTGGCAT 11798 Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219 ||| || || || || |||||||| || | || ||| || || ||||| |||||||| Sbjct 11799 CAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATACCTTC 11858 Query 93220 CACGGCTGCAAATGCCA-CAATACGTTCGGCAAAATTTGCGGA---ATTACTGCTGATCC 93275 || |||||| || | |||| | |||||||||| | || ||| ||| | ||| Sbjct 11859 AACACATGCAAAGGCAATCAAT-CTTTCGGCAAAAGAGACTGATGGATT--TGCAG-TCC 11914 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | |||| ||||| || || |||| || ||| || | ||||| ||||| || || | Sbjct 11915 AGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTGAAAA 11974 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | | || |||| ||| | ||| | ||||| || || || | || ||||| |||| Sbjct 11975 GAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTACATCTCAG 12034 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | || |||||||| || |||||||| || || || ||||||| |||||| || ||||| | Sbjct 12035 AGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTAATCTGGA 12094 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 || || |||||| || | | ||||||||| || ||||| || || || | || | Sbjct 12095 TATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCAGAGAAGA 12154 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATA 93575 | ||||| | || | |||||||| || ||||| ||||||||| |||| || | || Sbjct 12155 ATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAGCCCAGTCAGTTA 12214 Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 |||| || | || || ||||| |||||||| ||||| ||||| ||||| || |||| Sbjct 12215 AATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTTCTTATACA 12274 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695 | ||||| || || |||| | ||| || || | |||||||||||||| || ||| | Sbjct 12275 TTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATTAGGATTCTCTCGAA 12334 Query 93696 GTAACGGCTC 93705 |||| || || Sbjct 12335 GTAATGGTTC 12344 >seq457 Length=1903206 Score = 111 bits (122), Expect = 2e-19 Identities = 90/107 (84%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| |||||||||||| || | | | ||| Sbjct 595902 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGATCTGGTCCTCAATTGAGGGCG 595843 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370 |||||||||||||||| |||||||||| || || | |||||| || Sbjct 595842 TGGGTTCGAACCCCACTTCTGACAAATTCTTTTT--ATTTTTTGGTG 595798 >seq447 Length=3773812 Score = 102 bits (112), Expect = 9e-17 Identities = 79/92 (86%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| |||||||||||| || | | | ||| Sbjct 3427366 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGATCTGGTCCTCAATTGAGGGCG 3427307 Query 126324 TGGGTTCGAACCCCACACCTGACA-AATTATT 126354 |||||||||||||||| |||||| |||| || Sbjct 3427306 TGGGTTCGAACCCCACTTCTGACATAATTTTT 3427275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556856338152840