Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq466 96.9 7e-15 seq451 96.9 7e-15 seq452 89.7 1e-12 >seq466 Length=1126313 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| || ||||||| || ||||||||||||||| Sbjct 577330 AGCCCGGTTAGCTCAGTCGGTAGAGCATGAGGCTCTTAACCTCAGGGTCGTGGGTTCGAG 577389 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 577390 CCCCACATCGGGC 577402 >seq451 Length=2993488 Score = 96.9 bits (106), Expect = 7e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||||||||||||||||||||||| || ||||||| || |||||||||||| Sbjct 1198449 GAAAGCCCGGTTAGCTCAGTCGGTAGAGCATGAGGCTCTTAACCTCAGGGTCGTGGGTTC 1198390 Query 142560 GAGCCCCACATCGGGC 142575 |||||||||||||||| Sbjct 1198389 GAGCCCCACATCGGGC 1198374 >seq452 Length=2717137 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 2525808 GCCCGGTTAGCTCAGTCGGTAGAGCATGAGGCTCTTAACCTCAGGGTCGTGGGTTCGAGC 2525749 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 2525748 CCCACATTGGGC 2525737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027828358569081