Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq444 176 8e-39
seq466 98.7 2e-15
seq451 98.7 2e-15
seq452 95.1 2e-14
>seq444
Length=5217058
Score = 176 bits (194), Expect = 8e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || ||||| || |||| || || ||||| || ||||| || || ||
Sbjct 3541573 CCACCACGAAGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAA 3541632
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||| || || ||||| ||||| | ||||| || |||||
Sbjct 3541633 AGGGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGG 3541692
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| |||||||||||||| || || |||||||| || |||||||| | | ||| |||
Sbjct 3541693 ATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACT 3541752
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||||||||||||| || |||||||| |||||||| || |||||
Sbjct 3541753 TCCAAGGTGATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799
Score = 174 bits (192), Expect = 3e-38
Identities = 177/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || || |||||||| || || ||||||||||| ||||| ||||||
Sbjct 3542377 CCACCACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTC 3542436
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | ||| || || ||||| || | | ||||| ||||||||
Sbjct 3542437 AGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGG 3542496
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| |||||||||||||| ||||| || || || || || ||||| | || ||| ||
Sbjct 3542497 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACC 3542556
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| | ||||||||||||||| || || ||||||||||| || ||||| |||
Sbjct 3542557 TCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCATGATG 3542607
Score = 158 bits (174), Expect = 2e-33
Identities = 149/190 (78%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331
|||||||||| |||||||| || | ||| | |||||||| | || || || ||||| |
Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGA 3542245
Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391
| | | |||||||||||| ||||| ||||||||||| || || || ||||||||| |
Sbjct 3542246 TCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTT 3542305
Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
| ||||| || | | ||| |||||||| || ||||||||||| |||||||| || ||||
Sbjct 3542306 CAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGA 3542365
Query 68452 ATATCTGCAT 68461
| || |||||
Sbjct 3542366 AAATTTGCAT 3542375
>seq466
Length=1126313
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||
Sbjct 577331 GCCCGGTTAGCTCAGTCGGTAGAGCATGAGGCTCTTAACCTCAGGGTCGTGGGTTCGAGC 577390
Query 84516 CCCACATCGGGC 84527
||||||||||||
Sbjct 577391 CCCACATCGGGC 577402
>seq451
Length=2993488
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||
Sbjct 1198445 GCCCGGTTAGCTCAGTCGGTAGAGCATGAGGCTCTTAACCTCAGGGTCGTGGGTTCGAGC 1198386
Query 84516 CCCACATCGGGC 84527
||||||||||||
Sbjct 1198385 CCCACATCGGGC 1198374
>seq452
Length=2717137
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||
Sbjct 2525808 GCCCGGTTAGCTCAGTCGGTAGAGCATGAGGCTCTTAACCTCAGGGTCGTGGGTTCGAGC 2525749
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 2525748 CCCACATTGGGC 2525737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921615015500520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |