Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq468 100 5e-16
seq453 100 5e-16
>seq468
Length=1118636
Score = 100 bits (110), Expect = 5e-16
Identities = 285/434 (66%), Gaps = 8/434 (2%)
Strand=Plus/Minus
Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483
|||| |||||| | ||||| ||||| || || ||||| || | || || || ||
Sbjct 1106708 TGGCATTCTTCTCTGCCTCAGACGGTATTGTAAATGAAAATTTAGCTGAAAGATTTATTC 1106649
Query 42484 AAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541
|| | ||| ||| || || || || || || || || || || || || |||||
Sbjct 1106648 GTGATATCCAGATTACC--GAAGCTCGATGTTTTTATGGTTTTCAAATTGCGATTGAGAA 1106591
Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601
|||||||||||| ||||| | |||| | |||| |||||| ||||| | | ||||
Sbjct 1106590 TGTGCACTCTGAGATGTACAGCCTACTGATAGACACTTACATCAGTGATCCTGACCAGCG 1106531
Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661
| || ||||| || || || || | || || | | ||||| || |||||
Sbjct 1106530 GGAGTTTCTTTTCAAAGCTATTGAAACTGTCCCATGTGTTGCTCAAAAGGCTGAATGGGC 1106471
Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721
| ||||||| | | ||| | | || | ||| || || | |||||| |
Sbjct 1106470 AATAAACTGGACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTGATTGCCTTTGCATG 1106411
Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781
|| || || ||||| ||||| ||| | |||||| | ||||| ||||| || | | ||
Sbjct 1106410 TGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAA--AAAGCGT 1106353
Query 42782 GTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839
| | |||||| || | || ||||| |||||||| ||| | || || || | |||
Sbjct 1106352 GGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGATTACAT 1106293
Query 42840 AGGGACTTTGCCTG 42853
| || ||||||||
Sbjct 1106292 TGTGATTTTGCCTG 1106279
>seq453
Length=2394413
Score = 100 bits (110), Expect = 5e-16
Identities = 285/434 (66%), Gaps = 8/434 (2%)
Strand=Plus/Minus
Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483
|||| |||||| | ||||| ||||| || || ||||| || | || || || ||
Sbjct 12160 TGGCATTCTTCTCTGCCTCAGACGGTATTGTAAATGAAAATTTAGCTGAAAGATTTATTC 12101
Query 42484 AAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541
|| | ||| ||| || || || || || || || || || || || || |||||
Sbjct 12100 GTGATATCCAGATTACC--GAAGCTCGATGTTTTTATGGTTTTCAAATTGCGATTGAGAA 12043
Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601
|||||||||||| ||||| | |||| | |||| |||||| ||||| | | ||||
Sbjct 12042 TGTGCACTCTGAGATGTACAGCCTACTGATAGACACTTACATCAGTGATCCTGACCAGCG 11983
Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661
| || ||||| || || || || | || || | | ||||| || |||||
Sbjct 11982 GGAGTTTCTTTTCAAAGCTATTGAAACTGTCCCATGTGTTGCTCAAAAGGCTGAATGGGC 11923
Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721
| ||||||| | | ||| | | || | ||| || || | |||||| |
Sbjct 11922 AATAAACTGGACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTGATTGCCTTTGCATG 11863
Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781
|| || || ||||| ||||| ||| | |||||| | ||||| ||||| || | | ||
Sbjct 11862 TGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAA--AAAGCGT 11805
Query 42782 GTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839
| | |||||| || | || ||||| |||||||| ||| | || || || | |||
Sbjct 11804 GGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGATTACAT 11745
Query 42840 AGGGACTTTGCCTG 42853
| || ||||||||
Sbjct 11744 TGTGATTTTGCCTG 11731
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944331633482160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |