Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq468 100 5e-16 seq453 100 5e-16 >seq468 Length=1118636 Score = 100 bits (110), Expect = 5e-16 Identities = 285/434 (66%), Gaps = 8/434 (2%) Strand=Plus/Minus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||| |||||| | ||||| ||||| || || ||||| || | || || || || Sbjct 1106708 TGGCATTCTTCTCTGCCTCAGACGGTATTGTAAATGAAAATTTAGCTGAAAGATTTATTC 1106649 Query 42484 AAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 || | ||| ||| || || || || || || || || || || || || ||||| Sbjct 1106648 GTGATATCCAGATTACC--GAAGCTCGATGTTTTTATGGTTTTCAAATTGCGATTGAGAA 1106591 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 |||||||||||| ||||| | |||| | |||| |||||| ||||| | | |||| Sbjct 1106590 TGTGCACTCTGAGATGTACAGCCTACTGATAGACACTTACATCAGTGATCCTGACCAGCG 1106531 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 | || ||||| || || || || | || || | | ||||| || ||||| Sbjct 1106530 GGAGTTTCTTTTCAAAGCTATTGAAACTGTCCCATGTGTTGCTCAAAAGGCTGAATGGGC 1106471 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | ||||||| | | ||| | | || | ||| || || | |||||| | Sbjct 1106470 AATAAACTGGACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTGATTGCCTTTGCATG 1106411 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 || || || ||||| ||||| ||| | |||||| | ||||| ||||| || | | || Sbjct 1106410 TGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAA--AAAGCGT 1106353 Query 42782 GTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | | |||||| || | || ||||| |||||||| ||| | || || || | ||| Sbjct 1106352 GGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGATTACAT 1106293 Query 42840 AGGGACTTTGCCTG 42853 | || |||||||| Sbjct 1106292 TGTGATTTTGCCTG 1106279 >seq453 Length=2394413 Score = 100 bits (110), Expect = 5e-16 Identities = 285/434 (66%), Gaps = 8/434 (2%) Strand=Plus/Minus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||| |||||| | ||||| ||||| || || ||||| || | || || || || Sbjct 12160 TGGCATTCTTCTCTGCCTCAGACGGTATTGTAAATGAAAATTTAGCTGAAAGATTTATTC 12101 Query 42484 AAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 || | ||| ||| || || || || || || || || || || || || ||||| Sbjct 12100 GTGATATCCAGATTACC--GAAGCTCGATGTTTTTATGGTTTTCAAATTGCGATTGAGAA 12043 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 |||||||||||| ||||| | |||| | |||| |||||| ||||| | | |||| Sbjct 12042 TGTGCACTCTGAGATGTACAGCCTACTGATAGACACTTACATCAGTGATCCTGACCAGCG 11983 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 | || ||||| || || || || | || || | | ||||| || ||||| Sbjct 11982 GGAGTTTCTTTTCAAAGCTATTGAAACTGTCCCATGTGTTGCTCAAAAGGCTGAATGGGC 11923 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | ||||||| | | ||| | | || | ||| || || | |||||| | Sbjct 11922 AATAAACTGGACTGCAAATCCATCAGTCTCTTTTGCCGAAAGATTGATTGCCTTTGCATG 11863 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 || || || ||||| ||||| ||| | |||||| | ||||| ||||| || | | || Sbjct 11862 TGTTGAAGGTATCTTTTTCTCAGGCTCTTTCGCCGCTATCTTTTGGCTTAA--AAAGCGT 11805 Query 42782 GTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | | |||||| || | || ||||| |||||||| ||| | || || || | ||| Sbjct 11804 GGCCTGATGCCAGGTTTAACTTTCTCTAACGAACTTATCTCTCGAGATGAAGGATTACAT 11745 Query 42840 AGGGACTTTGCCTG 42853 | || |||||||| Sbjct 11744 TGTGATTTTGCCTG 11731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944331633482160