Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq450 156 1e-32 seq444 145 2e-29 >seq450 Length=3639652 Score = 156 bits (172), Expect = 1e-32 Identities = 275/396 (69%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 72438 TATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCT 72497 ||||| ||||| |||||||| || || | ||||| || || || ||||| || ||| Sbjct 785459 TATGGTAAAGTCCAAGAAATACCACAAAATGAAAAAACACCTTTCTATCCAAGATCGCCT 785518 Query 72498 TACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAAC 72557 ||||||||||| || ||||| | ||| ||||| | || || ||||| | || ||| Sbjct 785519 TACGGTGTTGCTAAATTGTATGGTTACTGGATAGTTGTCAACTATCGTGAAGCATACAAC 785578 Query 72558 ATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTC 72617 |||| || | ||| |||| || ||||| || || || | ||||| | || Sbjct 785579 ATGTTTGCAGTCAATGGTATTTTATTTAATCATGAAAGCCCTAGAAGAGGTGAAACTTTT 785638 Query 72618 GTGACTCGTAAAATCACGA-AGGTGGTCGCGAATATTTTCAATGGTG--TCGAAAAATGC 72674 || || |||||||| || | ||||| | || || |||| | |||| | | | || Sbjct 785639 GTTACCCGTAAAATTACTAGAGGTGTT-GCCAAGATTTCTATCGGTGAGTTGGACTAT-- 785695 Query 72675 ATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAA 72734 || | || ||||| |||| ||||||||||| ||||| ||||||| ||||| || ||| Sbjct 785696 ATCGAACTAGGTAACTTAGACGCCAAAAGAGACTGGGGTCATGCGAAAGATTATGTTGAA 785755 Query 72735 GCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAA 72794 || |||||| | ||||| || ||||| | || || || | ||||| || || || ||| Sbjct 785756 GCTATGTGGCTCATGCTTCAGCAAGACAAGCCTGAAGATTTCGTGATAGCCACTGGAAAA 785815 Query 72795 ACAACGAGCGTTCGTGAGTTCGTGAAAATGGCATTC 72830 | || ||||| ||||| || || |||||| Sbjct 785816 GCTCAAAGTGTTCGCGAGTTTGTTGAAGAAGCATTC 785851 >seq444 Length=5217058 Score = 145 bits (160), Expect = 2e-29 Identities = 148/193 (77%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| || ||| || || ||||| || | ||||| || ||||| Sbjct 3541836 TTCTTTTTGAATATTATAATCACTGAGAGTACGACCGTCCTCGAGCTGTTTACCAGCGAA 3541895 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||| ||||| | |||||| |||||||| || |||||||| ||||||||||| Sbjct 3541896 GATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTGTCTTGGATTTTGGCTTTCACGTT 3541955 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| | ||| || || || || || ||||| || || ||||| || || Sbjct 3541956 TTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATGGTCTTACCAGTAAGAGTTTTTAC 3542015 Query 288462 GAATATCTGCATT 288474 ||| || |||||| Sbjct 3542016 GAAAATTTGCATT 3542028 Score = 132 bits (146), Expect = 1e-25 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||| || |||| |||| | || |||| || |||||||| || || || ||| Sbjct 3542377 CCACCACGAAGTCGTAAGACCAAG-TGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCT 3542435 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||| | ||||| || |||||||||| |||||||||| ||| Sbjct 3542436 CAGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGG 3542495 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| || || ||||| || ||||| || ||||| |||| || | ||| || Sbjct 3542496 GATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAAC 3542555 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| || || || || |||||||||||||| || ||||| ||| Sbjct 3542556 CTCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCATGATG 3542607 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || |||| | ||| | ||| | || |||||| || || || ||||| Sbjct 3541570 TGACCACCACGAAGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCA 3541629 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || || || || | ||||| || |||||||| |||||||||||| | | Sbjct 3541630 GAAAGGGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGT 3541689 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| || || |||||||| || || || ||||| || | ||| | ||| Sbjct 3541690 GGGATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCA 3541749 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| || || || || || || |||||||| || ||||| Sbjct 3541750 ACTTCCAAGGTGATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799 Score = 123 bits (136), Expect = 6e-23 Identities = 144/193 (75%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||||||||||||||| || | | || ||||| ||||| | ||||||||| ||||||| Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGA 3542245 Query 288344 TCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 ||| ||| ||||| || ||| || ||||| || ||||||||||| || || |||| Sbjct 3542246 TCAAACGTTGTTG---GTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGT 3542302 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 |||| || | |||| | ||| ||||| | || || || || || || || || || | Sbjct 3542303 TTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAA 3542362 Query 288461 CGAATATCTGCAT 288473 |||| || ||||| Sbjct 3542363 CGAAAATTTGCAT 3542375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179644711719598