Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq450 156 1e-32
seq444 145 2e-29
>seq450
Length=3639652
Score = 156 bits (172), Expect = 1e-32
Identities = 275/396 (69%), Gaps = 6/396 (2%)
Strand=Plus/Plus
Query 72438 TATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCT 72497
||||| ||||| |||||||| || || | ||||| || || || ||||| || |||
Sbjct 785459 TATGGTAAAGTCCAAGAAATACCACAAAATGAAAAAACACCTTTCTATCCAAGATCGCCT 785518
Query 72498 TACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAAC 72557
||||||||||| || ||||| | ||| ||||| | || || ||||| | || |||
Sbjct 785519 TACGGTGTTGCTAAATTGTATGGTTACTGGATAGTTGTCAACTATCGTGAAGCATACAAC 785578
Query 72558 ATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTC 72617
|||| || | ||| |||| || ||||| || || || | ||||| | ||
Sbjct 785579 ATGTTTGCAGTCAATGGTATTTTATTTAATCATGAAAGCCCTAGAAGAGGTGAAACTTTT 785638
Query 72618 GTGACTCGTAAAATCACGA-AGGTGGTCGCGAATATTTTCAATGGTG--TCGAAAAATGC 72674
|| || |||||||| || | ||||| | || || |||| | |||| | | | ||
Sbjct 785639 GTTACCCGTAAAATTACTAGAGGTGTT-GCCAAGATTTCTATCGGTGAGTTGGACTAT-- 785695
Query 72675 ATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAA 72734
|| | || ||||| |||| ||||||||||| ||||| ||||||| ||||| || |||
Sbjct 785696 ATCGAACTAGGTAACTTAGACGCCAAAAGAGACTGGGGTCATGCGAAAGATTATGTTGAA 785755
Query 72735 GCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAA 72794
|| |||||| | ||||| || ||||| | || || || | ||||| || || || |||
Sbjct 785756 GCTATGTGGCTCATGCTTCAGCAAGACAAGCCTGAAGATTTCGTGATAGCCACTGGAAAA 785815
Query 72795 ACAACGAGCGTTCGTGAGTTCGTGAAAATGGCATTC 72830
| || ||||| ||||| || || ||||||
Sbjct 785816 GCTCAAAGTGTTCGCGAGTTTGTTGAAGAAGCATTC 785851
>seq444
Length=5217058
Score = 145 bits (160), Expect = 2e-29
Identities = 148/193 (77%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||||||||| |||||||| || ||| || || ||||| || | ||||| || |||||
Sbjct 3541836 TTCTTTTTGAATATTATAATCACTGAGAGTACGACCGTCCTCGAGCTGTTTACCAGCGAA 3541895
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||||| ||| ||||| | |||||| |||||||| || |||||||| |||||||||||
Sbjct 3541896 GATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTGTCTTGGATTTTGGCTTTCACGTT 3541955
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||| |||| ||| | ||| || || || || || ||||| || || ||||| || ||
Sbjct 3541956 TTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATGGTCTTACCAGTAAGAGTTTTTAC 3542015
Query 288462 GAATATCTGCATT 288474
||| || ||||||
Sbjct 3542016 GAAAATTTGCATT 3542028
Score = 132 bits (146), Expect = 1e-25
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
||||| || |||| |||| | || |||| || |||||||| || || || |||
Sbjct 3542377 CCACCACGAAGTCGTAAGACCAAG-TGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCT 3542435
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| || ||||| ||||| | ||||| || |||||||||| |||||||||| |||
Sbjct 3542436 CAGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGG 3542495
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
||| ||||| || || ||||| || ||||| || ||||| |||| || | ||| ||
Sbjct 3542496 GATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAAC 3542555
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| || ||||| || || || || |||||||||||||| || ||||| |||
Sbjct 3542556 CTCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCATGATG 3542607
Score = 127 bits (140), Expect = 5e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| || |||| | ||| | ||| | || |||||| || || || |||||
Sbjct 3541570 TGACCACCACGAAGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCA 3541629
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || || || || || || | ||||| || |||||||| |||||||||||| | |
Sbjct 3541630 GAAAGGGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGT 3541689
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||||||||| || || |||||||| || || || ||||| || | ||| | |||
Sbjct 3541690 GGGATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCA 3541749
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | ||||| || || || || || || |||||||| || |||||
Sbjct 3541750 ACTTCCAAGGTGATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799
Score = 123 bits (136), Expect = 6e-23
Identities = 144/193 (75%), Gaps = 6/193 (3%)
Strand=Plus/Plus
Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343
|||||||||||||||| || | | || ||||| ||||| | ||||||||| |||||||
Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGA 3542245
Query 288344 TCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400
||| ||| ||||| || ||| || ||||| || ||||||||||| || || ||||
Sbjct 3542246 TCAAACGTTGTTG---GTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGT 3542302
Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460
|||| || | |||| | ||| ||||| | || || || || || || || || || |
Sbjct 3542303 TTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAA 3542362
Query 288461 CGAATATCTGCAT 288473
|||| || |||||
Sbjct 3542363 CGAAAATTTGCAT 3542375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179644711719598
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |