Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq450 156 9e-33
seq448 140 7e-28
>seq450
Length=3639652
Score = 156 bits (172), Expect = 9e-33
Identities = 275/396 (69%), Gaps = 6/396 (2%)
Strand=Plus/Plus
Query 68427 TATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCT 68486
||||| ||||| |||||||| || || | ||||| || || || ||||| || |||
Sbjct 785459 TATGGTAAAGTCCAAGAAATACCACAAAATGAAAAAACACCTTTCTATCCAAGATCGCCT 785518
Query 68487 TACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAAC 68546
||||||||||| || ||||| | ||| ||||| | || || ||||| | || |||
Sbjct 785519 TACGGTGTTGCTAAATTGTATGGTTACTGGATAGTTGTCAACTATCGTGAAGCATACAAC 785578
Query 68547 ATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTC 68606
|||| || | ||| |||| || ||||| || || || | ||||| | ||
Sbjct 785579 ATGTTTGCAGTCAATGGTATTTTATTTAATCATGAAAGCCCTAGAAGAGGTGAAACTTTT 785638
Query 68607 GTGACTCGTAAAATCACGA-AGGTGGTCGCGAATATTTTCAATGGTG--TCGAAAAATGC 68663
|| || |||||||| || | ||||| | || || |||| | |||| | | | ||
Sbjct 785639 GTTACCCGTAAAATTACTAGAGGTGTT-GCCAAGATTTCTATCGGTGAGTTGGACTAT-- 785695
Query 68664 ATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAA 68723
|| | || ||||| |||| ||||||||||| ||||| ||||||| ||||| || |||
Sbjct 785696 ATCGAACTAGGTAACTTAGACGCCAAAAGAGACTGGGGTCATGCGAAAGATTATGTTGAA 785755
Query 68724 GCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAA 68783
|| |||||| | ||||| || ||||| | || || || | ||||| || || || |||
Sbjct 785756 GCTATGTGGCTCATGCTTCAGCAAGACAAGCCTGAAGATTTCGTGATAGCCACTGGAAAA 785815
Query 68784 ACAACGAGCGTTCGTGAGTTCGTGAAAATGGCATTC 68819
| || ||||| ||||| || || ||||||
Sbjct 785816 GCTCAAAGTGTTCGCGAGTTTGTTGAAGAAGCATTC 785851
>seq448
Length=3678511
Score = 140 bits (154), Expect = 7e-28
Identities = 381/575 (66%), Gaps = 9/575 (2%)
Strand=Plus/Minus
Query 297156 TTTCTTCGATCTTACCTTTGAATCCTCGATACCACGGTTTCATTTCGACGAGATCTTCTC 297215
||||| | ||| |||| ||||||| |||| |||||||| || | |||||||
Sbjct 51874 TTTCT-CAATCAAACCTCGGAATCCTTTGAACCAGGGTTTCATCGGAACAATTTCTTCTC 51816
Query 297216 CAGCAATCAATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAG 297275
| |||||||| ||||| ||| | || | ||| ||||||| ||| | || || ||||
Sbjct 51815 CTTTAATCAATCTCTTCAAGTTTGCAACAACATCTCTTGGATTATAATTGGGAATCTTAG 51756
Query 297276 TCGACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCA 297335
| ||| ||||| || ||||| | ||||| |||| | | || | | ||| |
Sbjct 51755 TGCTCCATCCGGTTCCAATTCCGTCAGCTCCATTTACCAACACCATTGGGAGTATAGGGA 51696
Query 297336 CATAATACTCTGGTTCGATCTTGTC-ACCGTCATCATACAGATATTTCAGAAGATTATCG 297394
||||||| |||||||| | || || | ||||| || ||||| | || | | ||
Sbjct 51695 CATAATATTCTGGTTCAA-CTCGTTGATTATCATCGTATAGATAATGGAGTAAAGGTTCA 51637
Query 297395 TCCGTATCGACGAAAACCTGT--CGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTG 297452
|| || | ||||| | | | || | || ||| ||| ||||||||||| || |
Sbjct 51636 TC--TAACTTGGAAAATATTTTTCTAGCAAGTGGACTCAATTTGGTGAAAATATAGCGAG 51579
Query 297453 CACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACC 297512
|||| || ||| ||||||||||||||||| | ||||| || || || | |||
Sbjct 51578 CACTGGCAGCATCTTTACCACCCTGCAATCTAGTCCCGAATTGACCAAGTGGAAGCAATA 51519
Query 297513 AGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAG 297572
|| ||||| ||||| || ||| |||| || || | | || || || || ||
Sbjct 51518 GATTTATGTTGTTGCTGCCAACAAAATCTTGAGCCAAACTGACAATTGTAGACATCAAAG 51459
Query 297573 ATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAAC-GTAACCGCTGAACTGTGCAACC 297631
| |||| || || || || || | | |||| ||| | ||| ||||| || ||
Sbjct 51458 ACACTTCACCGTGATGGTATGCTGATTCCGAACCAACGGTACCTGCT-AACTGAGCTACT 51400
Query 297632 TTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGT 297691
|| || || ||||||| ||||||||| || | | | ||||| | ||| ||||
Sbjct 51399 TTAGTTTCATTCTTCAAATTTCGCTTGAAACATGTAAACAAAACTTTTCTTTGGCCAGGT 51340
Query 297692 TTGAAACCATCAACGACCGACGGAATGCTTCGTTC 297726
||||| ||||| | || || ||||| ||||||
Sbjct 51339 TTGAATCCATCCATTACTGATGGAATCGATCGTTC 51305
Score = 138 bits (152), Expect = 2e-27
Identities = 383/576 (66%), Gaps = 11/576 (2%)
Strand=Plus/Plus
Query 297156 TTTCTTCGATCTTACCTTTGAATCCTCGATACCACGGTTTCATTTCGACGAGATCTTCTC 297215
||||| | ||| |||| ||||||| |||| |||||||| || | |||||||
Sbjct 133745 TTTCT-CAATCAAACCTCGGAATCCTTTGAACCAGGGTTTCATCGGAACAACTTCTTCTC 133803
Query 297216 CAGCAATCAATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAG 297275
|| |||||||| ||||| ||| | || | ||| ||||||| ||| | || || ||||
Sbjct 133804 CATTAATCAATCTCTTCAAGTTTGCAACAACATCTCTTGGATTATAATTGGGAATCTTAG 133863
Query 297276 TCGACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCA 297335
| ||| ||||| || ||||| | ||||| |||| | | || | | ||| |
Sbjct 133864 TGCTCCATCCGGTTCCAATTCCGTCAGCTCCATTTACCAACACCATTGGGAGTATAGGGA 133923
Query 297336 CATAATACTCTGGTTCGATCTTGTC-ACCGTCATCATACAGATATTTCAGAAGATTATCG 297394
||||||| |||||||| | || || | ||||| || ||||| | || | | ||
Sbjct 133924 CATAATATTCTGGTTCAA-CTCGTTGATTATCATCGTATAGATAATGGAGTAAAGGTTCA 133982
Query 297395 TCCGTATCGACGAAAACCTGT--CGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTG 297452
|| || | ||||| | | | || | || ||| ||| ||||||||||| || |
Sbjct 133983 TC--TAACTTGGAAAATATTTTTCTAGCAAGTGGACTCAATTTGGTGAAAATATAACGAG 134040
Query 297453 CACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACC 297512
|||| ||| ||| ||||||||||||||||| | ||||| || || || | |||
Sbjct 134041 CACTGGCGGCATCTTTACCACCCTGCAATCTAGTCCCGAATTGACCAAGTGGAAGCAATA 134100
Query 297513 AGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAG 297572
|| ||||| ||||| || ||| |||| || || | | || || || || ||
Sbjct 134101 GATTTATGTTGTTGCTGCCAACAAAATCTTGAGCCAAACTGACAATTGTAGACATCAAAG 134160
Query 297573 ATGCTTCGCCATGGTGATAGGCGCTATGCTCTG-CAAC-GTAACCGCTGAACTGTGCAAC 297630
| |||| || || || || || || | | |||| ||| | ||| ||||| || ||
Sbjct 134161 ACACTTCACCGTGATGGTATGC-TGATTCGGAGCCAACGGTACCAGCT-AACTGAGCTAC 134218
Query 297631 CTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGG 297690
|| || || ||||||| || |||||| || | | | || || | ||| |||
Sbjct 134219 TTTAGTTTCATTCTTCAAATTTCGTTTGAAACATGTAAACAAAACCTTTCTTTGGCCAGG 134278
Query 297691 TTTGAAACCATCAACGACCGACGGAATGCTTCGTTC 297726
|||||| ||||| | || || ||||| ||||||
Sbjct 134279 TTTGAATCCATCCATTACTGATGGAATCGATCGTTC 134314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102870942253350
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