Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq450 156 9e-33 seq448 140 7e-28 >seq450 Length=3639652 Score = 156 bits (172), Expect = 9e-33 Identities = 275/396 (69%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 68427 TATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCT 68486 ||||| ||||| |||||||| || || | ||||| || || || ||||| || ||| Sbjct 785459 TATGGTAAAGTCCAAGAAATACCACAAAATGAAAAAACACCTTTCTATCCAAGATCGCCT 785518 Query 68487 TACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAAC 68546 ||||||||||| || ||||| | ||| ||||| | || || ||||| | || ||| Sbjct 785519 TACGGTGTTGCTAAATTGTATGGTTACTGGATAGTTGTCAACTATCGTGAAGCATACAAC 785578 Query 68547 ATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTC 68606 |||| || | ||| |||| || ||||| || || || | ||||| | || Sbjct 785579 ATGTTTGCAGTCAATGGTATTTTATTTAATCATGAAAGCCCTAGAAGAGGTGAAACTTTT 785638 Query 68607 GTGACTCGTAAAATCACGA-AGGTGGTCGCGAATATTTTCAATGGTG--TCGAAAAATGC 68663 || || |||||||| || | ||||| | || || |||| | |||| | | | || Sbjct 785639 GTTACCCGTAAAATTACTAGAGGTGTT-GCCAAGATTTCTATCGGTGAGTTGGACTAT-- 785695 Query 68664 ATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAA 68723 || | || ||||| |||| ||||||||||| ||||| ||||||| ||||| || ||| Sbjct 785696 ATCGAACTAGGTAACTTAGACGCCAAAAGAGACTGGGGTCATGCGAAAGATTATGTTGAA 785755 Query 68724 GCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAA 68783 || |||||| | ||||| || ||||| | || || || | ||||| || || || ||| Sbjct 785756 GCTATGTGGCTCATGCTTCAGCAAGACAAGCCTGAAGATTTCGTGATAGCCACTGGAAAA 785815 Query 68784 ACAACGAGCGTTCGTGAGTTCGTGAAAATGGCATTC 68819 | || ||||| ||||| || || |||||| Sbjct 785816 GCTCAAAGTGTTCGCGAGTTTGTTGAAGAAGCATTC 785851 >seq448 Length=3678511 Score = 140 bits (154), Expect = 7e-28 Identities = 381/575 (66%), Gaps = 9/575 (2%) Strand=Plus/Minus Query 297156 TTTCTTCGATCTTACCTTTGAATCCTCGATACCACGGTTTCATTTCGACGAGATCTTCTC 297215 ||||| | ||| |||| ||||||| |||| |||||||| || | ||||||| Sbjct 51874 TTTCT-CAATCAAACCTCGGAATCCTTTGAACCAGGGTTTCATCGGAACAATTTCTTCTC 51816 Query 297216 CAGCAATCAATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAG 297275 | |||||||| ||||| ||| | || | ||| ||||||| ||| | || || |||| Sbjct 51815 CTTTAATCAATCTCTTCAAGTTTGCAACAACATCTCTTGGATTATAATTGGGAATCTTAG 51756 Query 297276 TCGACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCA 297335 | ||| ||||| || ||||| | ||||| |||| | | || | | ||| | Sbjct 51755 TGCTCCATCCGGTTCCAATTCCGTCAGCTCCATTTACCAACACCATTGGGAGTATAGGGA 51696 Query 297336 CATAATACTCTGGTTCGATCTTGTC-ACCGTCATCATACAGATATTTCAGAAGATTATCG 297394 ||||||| |||||||| | || || | ||||| || ||||| | || | | || Sbjct 51695 CATAATATTCTGGTTCAA-CTCGTTGATTATCATCGTATAGATAATGGAGTAAAGGTTCA 51637 Query 297395 TCCGTATCGACGAAAACCTGT--CGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTG 297452 || || | ||||| | | | || | || ||| ||| ||||||||||| || | Sbjct 51636 TC--TAACTTGGAAAATATTTTTCTAGCAAGTGGACTCAATTTGGTGAAAATATAGCGAG 51579 Query 297453 CACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACC 297512 |||| || ||| ||||||||||||||||| | ||||| || || || | ||| Sbjct 51578 CACTGGCAGCATCTTTACCACCCTGCAATCTAGTCCCGAATTGACCAAGTGGAAGCAATA 51519 Query 297513 AGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAG 297572 || ||||| ||||| || ||| |||| || || | | || || || || || Sbjct 51518 GATTTATGTTGTTGCTGCCAACAAAATCTTGAGCCAAACTGACAATTGTAGACATCAAAG 51459 Query 297573 ATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAAC-GTAACCGCTGAACTGTGCAACC 297631 | |||| || || || || || | | |||| ||| | ||| ||||| || || Sbjct 51458 ACACTTCACCGTGATGGTATGCTGATTCCGAACCAACGGTACCTGCT-AACTGAGCTACT 51400 Query 297632 TTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGT 297691 || || || ||||||| ||||||||| || | | | ||||| | ||| |||| Sbjct 51399 TTAGTTTCATTCTTCAAATTTCGCTTGAAACATGTAAACAAAACTTTTCTTTGGCCAGGT 51340 Query 297692 TTGAAACCATCAACGACCGACGGAATGCTTCGTTC 297726 ||||| ||||| | || || ||||| |||||| Sbjct 51339 TTGAATCCATCCATTACTGATGGAATCGATCGTTC 51305 Score = 138 bits (152), Expect = 2e-27 Identities = 383/576 (66%), Gaps = 11/576 (2%) Strand=Plus/Plus Query 297156 TTTCTTCGATCTTACCTTTGAATCCTCGATACCACGGTTTCATTTCGACGAGATCTTCTC 297215 ||||| | ||| |||| ||||||| |||| |||||||| || | ||||||| Sbjct 133745 TTTCT-CAATCAAACCTCGGAATCCTTTGAACCAGGGTTTCATCGGAACAACTTCTTCTC 133803 Query 297216 CAGCAATCAATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAG 297275 || |||||||| ||||| ||| | || | ||| ||||||| ||| | || || |||| Sbjct 133804 CATTAATCAATCTCTTCAAGTTTGCAACAACATCTCTTGGATTATAATTGGGAATCTTAG 133863 Query 297276 TCGACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCA 297335 | ||| ||||| || ||||| | ||||| |||| | | || | | ||| | Sbjct 133864 TGCTCCATCCGGTTCCAATTCCGTCAGCTCCATTTACCAACACCATTGGGAGTATAGGGA 133923 Query 297336 CATAATACTCTGGTTCGATCTTGTC-ACCGTCATCATACAGATATTTCAGAAGATTATCG 297394 ||||||| |||||||| | || || | ||||| || ||||| | || | | || Sbjct 133924 CATAATATTCTGGTTCAA-CTCGTTGATTATCATCGTATAGATAATGGAGTAAAGGTTCA 133982 Query 297395 TCCGTATCGACGAAAACCTGT--CGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTG 297452 || || | ||||| | | | || | || ||| ||| ||||||||||| || | Sbjct 133983 TC--TAACTTGGAAAATATTTTTCTAGCAAGTGGACTCAATTTGGTGAAAATATAACGAG 134040 Query 297453 CACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACC 297512 |||| ||| ||| ||||||||||||||||| | ||||| || || || | ||| Sbjct 134041 CACTGGCGGCATCTTTACCACCCTGCAATCTAGTCCCGAATTGACCAAGTGGAAGCAATA 134100 Query 297513 AGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAG 297572 || ||||| ||||| || ||| |||| || || | | || || || || || Sbjct 134101 GATTTATGTTGTTGCTGCCAACAAAATCTTGAGCCAAACTGACAATTGTAGACATCAAAG 134160 Query 297573 ATGCTTCGCCATGGTGATAGGCGCTATGCTCTG-CAAC-GTAACCGCTGAACTGTGCAAC 297630 | |||| || || || || || || | | |||| ||| | ||| ||||| || || Sbjct 134161 ACACTTCACCGTGATGGTATGC-TGATTCGGAGCCAACGGTACCAGCT-AACTGAGCTAC 134218 Query 297631 CTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGG 297690 || || || ||||||| || |||||| || | | | || || | ||| ||| Sbjct 134219 TTTAGTTTCATTCTTCAAATTTCGTTTGAAACATGTAAACAAAACCTTTCTTTGGCCAGG 134278 Query 297691 TTTGAAACCATCAACGACCGACGGAATGCTTCGTTC 297726 |||||| ||||| | || || ||||| |||||| Sbjct 134279 TTTGAATCCATCCATTACTGATGGAATCGATCGTTC 134314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102870942253350