Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq442 127 2e-24
seq478 82.4 9e-11
>seq442
Length=7801961
Score = 127 bits (140), Expect = 2e-24
Identities = 651/1029 (63%), Gaps = 27/1029 (3%)
Strand=Plus/Plus
Query 113596 TCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGA 113655
||| | ||||||||| || ||||| ||||| ||| |||| |||| | |||||||||||
Sbjct 3251637 TCGTAAGTAGTACATGCCTGTCTTAAGCCCAAGCTCCCAGCCATAGAAATGCATCGAGGT 3251696
Query 113656 CAACTTGGAGAGTGTTGGACTTTC--CATGAAGAGGTTCATACTTTGGGATTGATCGATG 113713
|| || | | | || ||||| ||||| | || | | ||| |||||| ||
Sbjct 3251697 CATTTTAGCAACAGAAGGTCTTTCAAAATGAATA--TTTAAAGATTGACTTTGATCAATA 3251754
Query 113714 AAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG----ATTTCCCACAC 113769
|| |||||| || || ||||| || | | || || | ||| |||||||| ||
Sbjct 3251755 AAAGCTCCACGTTCAGCAGCCATTTCCAGAATAT--TT--TTTTGAGGAATTTCCCAAAC 3251810
Query 113770 AGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACC 113829
||||| || | | ||||||||| ||||||||| | | ||| ||| |||||||| |
Sbjct 3251811 AGTTCGATACAATTGCTTAATATCCTCTGGGATACCTTCAATAGCTTGAATGGAGCCTCT 3251870
Query 113830 CGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTC 113889
| | || | || |||| || | ||| || | | | | ||| |
Sbjct 3251871 GTGATAAATAATCTGTTCTCTCATGTCTTCATTCCAAAGTTCTCGATCAGTCAAATCTTT 3251930
Query 113890 CACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATT 113949
|| ||||| | || || || ||| ||||| | || |||| |||||| ||
Sbjct 3251931 GACAAGATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATAGATGTT 3251990
Query 113950 GGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGG 114009
| || ||||| |||| | || ||||| ||||| || || || || || ||||| ||
Sbjct 3251991 ACTTGTATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGG 3252050
Query 114010 CATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGC 114069
|||||| || | | || ||||| || ||||| | || ||| ||| || |
Sbjct 3252051 CATGGGCGCTAATAACAGACTGTTTCGAAGACCATGTTTAGCAATTTTACTCTTCAGCTC 3252110
Query 114070 GTCCCAGT--CGTAGTTGAGCT-TTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 114126
||||| | || | || | ||| | || |||||||||| | || | || ||
Sbjct 3252111 TGTCCAGTCCCACAGATTAGATGGTGTTACACC---CCACATATCATATTGCAAAATCCC 3252167
Query 114127 TTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGA 114186
|| || || || ||||| || | || ||||| || || | || || | || |
Sbjct 3252168 TTTAGAAGCGGGAGATCCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGCTCACA 3252227
Query 114187 GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGC 114246
|| || ||||| ||| | | ||| ||||||||||| || | |||||| | ||
Sbjct 3252228 ACTTGCTTCGAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTACGAGC 3252287
Query 114247 CTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACC 114306
|| | ||||| | || |||| |||| | || || | ||||| || ||
Sbjct 3252288 TTCTGGGCTGTCAAATGGATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGAACTCC 3252347
Query 114307 GAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAA 114363
| |||||| || |||| | | || || | || || ||| | ||||||||
Sbjct 3252348 TAAGCCAATAGGTCGATTCTTTTTGTTTGAAT---AAGAGGCTTCCTTTAGAGGATAAAA 3252404
Query 114364 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 114423
|| | || |||| | |||| |||| ||||| | || || | ||| | || |
Sbjct 3252405 GTTGATCTCAATAATTTTGTTTAAATTTCGTGTGACCGCTTTGGTAACTTCTTTGAGTCT 3252464
Query 114424 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 114483
| | ||||||| | | || || | ||| | || | ||| || || || ||
Sbjct 3252465 TGCAAAATCAAATTTTTG---TTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGCAAG 3252521
Query 114484 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 114543
|||||| |||| ||||| || | || || | |||||| || |||| ||||||
Sbjct 3252522 ATTACAAACAGCAACTTCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATTTGA 3252581
Query 114544 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAG 114603
|| ||| ||||| || | || || ||||| |||||| ||||| ||| || |||||
Sbjct 3252582 ACACTTGATGGTTCCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATAAAG 3252641
Query 114604 CATGTATGG 114612
||| || ||
Sbjct 3252642 CATATACGG 3252650
>seq478
Length=629985
Score = 82.4 bits (90), Expect = 9e-11
Identities = 169/247 (68%), Gaps = 6/247 (2%)
Strand=Plus/Minus
Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785
||||||| ||||||||||| | |||||||| | |||||||||||| ||| | |||
Sbjct 272619 AACCTGTACCAATACCTTCAGCACCGTTCACCAAAACCATTGGAAGAACTGGTACATAAT 272560
Query 171786 AGTCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845
| || ||||||| || |||||||| | ||| ||||| | || || | | |
Sbjct 272559 ATTCGGGTTCAACTTTACTGTTATCATCATATAGATAATTGAGTAAAGGATCAT--CAAG 272502
Query 171846 GAT--CAAAGATTTTACGAGCATCCTTG-GTGAGTTTTGTGAAGATGTACCTCGTTTGAG 171902
|| ||| ||||||||||| | | | | | || ||||| ||||| | | |
Sbjct 272501 TATGGGAAATATTTTACGAGC-TAATGGACTTAACTTAGTGAAAATGTAACGAGGACTGG 272443
Query 171903 ACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGA 171962
||||||||| ||||| | | ||| || |||||||||||| || || || || |
Sbjct 272442 CCGCATCTTTACCACCAAGTAAACGTGTACCAAATTGACCAAGGGGCATGAGAAGGTTAA 272383
Query 171963 TATTGTT 171969
|||||||
Sbjct 272382 TATTGTT 272376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597348813704280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |