Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq442 127 2e-24 seq478 82.4 9e-11 >seq442 Length=7801961 Score = 127 bits (140), Expect = 2e-24 Identities = 651/1029 (63%), Gaps = 27/1029 (3%) Strand=Plus/Plus Query 113596 TCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGA 113655 ||| | ||||||||| || ||||| ||||| ||| |||| |||| | ||||||||||| Sbjct 3251637 TCGTAAGTAGTACATGCCTGTCTTAAGCCCAAGCTCCCAGCCATAGAAATGCATCGAGGT 3251696 Query 113656 CAACTTGGAGAGTGTTGGACTTTC--CATGAAGAGGTTCATACTTTGGGATTGATCGATG 113713 || || | | | || ||||| ||||| | || | | ||| |||||| || Sbjct 3251697 CATTTTAGCAACAGAAGGTCTTTCAAAATGAATA--TTTAAAGATTGACTTTGATCAATA 3251754 Query 113714 AAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG----ATTTCCCACAC 113769 || |||||| || || ||||| || | | || || | ||| |||||||| || Sbjct 3251755 AAAGCTCCACGTTCAGCAGCCATTTCCAGAATAT--TT--TTTTGAGGAATTTCCCAAAC 3251810 Query 113770 AGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACC 113829 ||||| || | | ||||||||| ||||||||| | | ||| ||| |||||||| | Sbjct 3251811 AGTTCGATACAATTGCTTAATATCCTCTGGGATACCTTCAATAGCTTGAATGGAGCCTCT 3251870 Query 113830 CGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTC 113889 | | || | || |||| || | ||| || | | | | ||| | Sbjct 3251871 GTGATAAATAATCTGTTCTCTCATGTCTTCATTCCAAAGTTCTCGATCAGTCAAATCTTT 3251930 Query 113890 CACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATT 113949 || ||||| | || || || ||| ||||| | || |||| |||||| || Sbjct 3251931 GACAAGATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATAGATGTT 3251990 Query 113950 GGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGG 114009 | || ||||| |||| | || ||||| ||||| || || || || || ||||| || Sbjct 3251991 ACTTGTATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGG 3252050 Query 114010 CATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGC 114069 |||||| || | | || ||||| || ||||| | || ||| ||| || | Sbjct 3252051 CATGGGCGCTAATAACAGACTGTTTCGAAGACCATGTTTAGCAATTTTACTCTTCAGCTC 3252110 Query 114070 GTCCCAGT--CGTAGTTGAGCT-TTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 114126 ||||| | || | || | ||| | || |||||||||| | || | || || Sbjct 3252111 TGTCCAGTCCCACAGATTAGATGGTGTTACACC---CCACATATCATATTGCAAAATCCC 3252167 Query 114127 TTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGA 114186 || || || || ||||| || | || ||||| || || | || || | || | Sbjct 3252168 TTTAGAAGCGGGAGATCCTGCATAAGTTTCGTAAGGTCCGAGTTCTTCAGCGAGCTCACA 3252227 Query 114187 GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGC 114246 || || ||||| ||| | | ||| ||||||||||| || | |||||| | || Sbjct 3252228 ACTTGCTTCGAGAGCTCCATAATAGATTGTCTCAAAGATTTGGACATTCAATTTACGAGC 3252287 Query 114247 CTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACC 114306 || | ||||| | || |||| |||| | || || | ||||| || || Sbjct 3252288 TTCTGGGCTGTCAAATGGATATCTCATTAAAAGAAATGCGTCTGCTAAGCCTTGAACTCC 3252347 Query 114307 GAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAA 114363 | |||||| || |||| | | || || | || || ||| | |||||||| Sbjct 3252348 TAAGCCAATAGGTCGATTCTTTTTGTTTGAAT---AAGAGGCTTCCTTTAGAGGATAAAA 3252404 Query 114364 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 114423 || | || |||| | |||| |||| ||||| | || || | ||| | || | Sbjct 3252405 GTTGATCTCAATAATTTTGTTTAAATTTCGTGTGACCGCTTTGGTAACTTCTTTGAGTCT 3252464 Query 114424 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 114483 | | ||||||| | | || || | ||| | || | ||| || || || || Sbjct 3252465 TGCAAAATCAAATTTTTG---TTCCTCGGTAACAAATTTTTTCAAGGCTATAGAGGCAAG 3252521 Query 114484 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 114543 |||||| |||| ||||| || | || || | |||||| || |||| |||||| Sbjct 3252522 ATTACAAACAGCAACTTCATCAGGGGCACTATATTCAACAATTTCAGTGCACAGATTTGA 3252581 Query 114544 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAG 114603 || ||| ||||| || | || || ||||| |||||| ||||| ||| || ||||| Sbjct 3252582 ACACTTGATGGTTCCAAGATTTTTCTGATTGGACTTTTCATTACAATGATCTTTATAAAG 3252641 Query 114604 CATGTATGG 114612 ||| || || Sbjct 3252642 CATATACGG 3252650 >seq478 Length=629985 Score = 82.4 bits (90), Expect = 9e-11 Identities = 169/247 (68%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785 ||||||| ||||||||||| | |||||||| | |||||||||||| ||| | ||| Sbjct 272619 AACCTGTACCAATACCTTCAGCACCGTTCACCAAAACCATTGGAAGAACTGGTACATAAT 272560 Query 171786 AGTCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 | || ||||||| || |||||||| | ||| ||||| | || || | | | Sbjct 272559 ATTCGGGTTCAACTTTACTGTTATCATCATATAGATAATTGAGTAAAGGATCAT--CAAG 272502 Query 171846 GAT--CAAAGATTTTACGAGCATCCTTG-GTGAGTTTTGTGAAGATGTACCTCGTTTGAG 171902 || ||| ||||||||||| | | | | | || ||||| ||||| | | | Sbjct 272501 TATGGGAAATATTTTACGAGC-TAATGGACTTAACTTAGTGAAAATGTAACGAGGACTGG 272443 Query 171903 ACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGA 171962 ||||||||| ||||| | | ||| || |||||||||||| || || || || | Sbjct 272442 CCGCATCTTTACCACCAAGTAAACGTGTACCAAATTGACCAAGGGGCATGAGAAGGTTAA 272383 Query 171963 TATTGTT 171969 ||||||| Sbjct 272382 TATTGTT 272376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597348813704280