Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq444 102 8e-17 seq442 84.2 2e-11 >seq444 Length=5217058 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || |||||||| ||||||||||| || | | ||| || | || ||| Sbjct 3541591 ACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCATCCTCA 3541650 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||| || || || | ||||| ||||| || || || || |||||||| || ||||| Sbjct 3541651 AGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCTTGG 3541710 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| ||| ||| || | || || | || ||||| | || | ||| || Sbjct 3541711 ATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATGGTTTTA 3541770 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | ||||| |||||||||||||| Sbjct 3541771 CCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||| || ||||| || || || |||| || ||||| Sbjct 3541825 TGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCGTCCTCGAGCTGT 3541884 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || | || | || || ||||| || || || |||||||| ||||| | |||| Sbjct 3541885 TTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTGTCTTGGA-TTTT 3541943 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| || || | |||||| | || || || | || | |||||| || || Sbjct 3541944 GGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATGGTCTTACCAGT 3542003 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | |||||||||||||||||||||| Sbjct 3542004 AAGAGTTTTTACGAAAATTTGCATT 3542028 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || |||||||||||||||||||| | ||| || | ||||||||||| Sbjct 3542401 TGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGTCCATCTTCAAGCTGT 3542460 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || | || | ||||| || ||||| || || ||||| || ||||| | | || Sbjct 3542461 TTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCCTTGTCTTGGA-TCTT 3542519 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| || | || || | || || || | || | ||| || || || Sbjct 3542520 GGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTGATGGTTTTTCCAGT 3542579 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 | ||| || |||||||||||||| Sbjct 3542580 AAGAGTCTTGACGAAAATTTGCAT 3542603 >seq442 Length=7801961 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/245 (68%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 153999 AAATCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACA 154058 ||||||| || | || ||||||| ||||||||| || || | | || || || | Sbjct 3251923 AAATCTTTGACAAGATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTA 3251982 Query 154059 TACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTT 154118 || | || || || | || || | ||||||||||| || || || ||||| || | | Sbjct 3251983 TAGATGTTACTTGTATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGAT 3252042 Query 154119 GCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAAT 154178 ||||| ||||| ||| | |||| | |||||| | ||| ||||| ||||| Sbjct 3252043 GCTGTAGGCATGGGCGCTAATAACAGACTGTTTCGAAGACCATGTTTAGCAATTTTACTC 3252102 Query 154179 TTTAAATCTGCCCAATTCCACA----AGTTGGTAGGTTGCACGTTCCACATGTCGTATTG 154234 || | |||| ||| | ||||| || |||| ||| ||| |||||| || ||||| Sbjct 3252103 TTCAGCTCTGTCCAGTCCCACAGATTAGATGGT--GTTACAC--CCCACATATCATATTG 3252158 Query 154235 CAAAA 154239 ||||| Sbjct 3252159 CAAAA 3252163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499640796596040