Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq444 102 8e-17
seq442 84.2 2e-11
>seq444
Length=5217058
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294
|||| ||| | || |||||||| ||||||||||| || | | ||| || | || |||
Sbjct 3541591 ACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCATCCTCA 3541650
Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354
||||| || || || | ||||| ||||| || || || || |||||||| || |||||
Sbjct 3541651 AGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCTTGG 3541710
Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414
||||| ||| ||| || | || || | || ||||| | || | ||| ||
Sbjct 3541711 ATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATGGTTTTA 3541770
Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || | ||||| ||||||||||||||
Sbjct 3541771 CCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799
Score = 102 bits (112), Expect = 8e-17
Identities = 147/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || |||||||||||||| || ||||| || || || |||| || |||||
Sbjct 3541825 TGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCGTCCTCGAGCTGT 3541884
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| || || | || | || || ||||| || || || |||||||| ||||| | ||||
Sbjct 3541885 TTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTGTCTTGGA-TTTT 3541943
Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
||||| || || | |||||| | || || || | || | |||||| || ||
Sbjct 3541944 GGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATGGTCTTACCAGT 3542003
Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444
| ||||||||||||||||||||||
Sbjct 3542004 AAGAGTTTTTACGAAAATTTGCATT 3542028
Score = 86.0 bits (94), Expect = 6e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || || |||||||||||||||||||| | ||| || | |||||||||||
Sbjct 3542401 TGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGTCCATCTTCAAGCTGT 3542460
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| || || | || | ||||| || ||||| || || ||||| || ||||| | | ||
Sbjct 3542461 TTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCCTTGTCTTGGA-TCTT 3542519
Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
||||| ||| || | || || | || || || | || | ||| || || ||
Sbjct 3542520 GGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTGATGGTTTTTCCAGT 3542579
Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443
| ||| || ||||||||||||||
Sbjct 3542580 AAGAGTCTTGACGAAAATTTGCAT 3542603
>seq442
Length=7801961
Score = 84.2 bits (92), Expect = 2e-11
Identities = 167/245 (68%), Gaps = 8/245 (3%)
Strand=Plus/Plus
Query 153999 AAATCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACA 154058
||||||| || | || ||||||| ||||||||| || || | | || || || |
Sbjct 3251923 AAATCTTTGACAAGATGGTGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTA 3251982
Query 154059 TACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTT 154118
|| | || || || | || || | ||||||||||| || || || ||||| || | |
Sbjct 3251983 TAGATGTTACTTGTATATGGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGAT 3252042
Query 154119 GCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAAT 154178
||||| ||||| ||| | |||| | |||||| | ||| ||||| |||||
Sbjct 3252043 GCTGTAGGCATGGGCGCTAATAACAGACTGTTTCGAAGACCATGTTTAGCAATTTTACTC 3252102
Query 154179 TTTAAATCTGCCCAATTCCACA----AGTTGGTAGGTTGCACGTTCCACATGTCGTATTG 154234
|| | |||| ||| | ||||| || |||| ||| ||| |||||| || |||||
Sbjct 3252103 TTCAGCTCTGTCCAGTCCCACAGATTAGATGGT--GTTACAC--CCCACATATCATATTG 3252158
Query 154235 CAAAA 154239
|||||
Sbjct 3252159 CAAAA 3252163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499640796596040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |