Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq444 122 9e-23
>seq444
Length=5217058
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459
||||| || || || | | | || || |||||||| || || || || | |||||| |
Sbjct 3541813 CGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGACCG 3541872
Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519
|||||||| |||||||| | |||| | ||| |||||||| || || ||||||||||||
Sbjct 3541873 TCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCTTTG 3541932
Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579
|| |||||| ||| | | ||| | || || | | || ||||| | || |
Sbjct 3541933 TCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTAATG 3541992
Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| |||||||| ||||||||||| ||||| |||||
Sbjct 3541993 GTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027
Score = 111 bits (122), Expect = 2e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459
|| || || || || | | | ||||| |||||||||||||| ||||||| |||||
Sbjct 3542389 CGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGTCCA 3542448
Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519
|| || || |||||||| | |||| | ||||||||| || || || |||||||| |||
Sbjct 3542449 TCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCCTTG 3542508
Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579
|| ||| || ||| | | ||| | ||||| | | || ||||| | || |
Sbjct 3542509 TCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTGATG 3542568
Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||||| ||||| ||||| || || ||||| ||||||
Sbjct 3542569 GTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCATG 3542604
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459
|| || |||||||||| |||| || || |||||||||||||| | || ||
Sbjct 3541585 CGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCA 3541644
Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519
||||| || |||||||| | |||| ||||||||||| || || || || ||||| |||
Sbjct 3541645 TCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTG 3541704
Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579
|| |||||| || | | ||| | |||||||| | || || || | || |
Sbjct 3541705 TCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATG 3541764
Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||||||||| || ||||| || ||||| |||||
Sbjct 3541765 GTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496258423697520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |