Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq444 163 2e-35 >seq444 Length=5217058 Score = 163 bits (180), Expect = 2e-35 Identities = 183/242 (76%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || ||| || || ||||||||||| |||||||| |||||||||||||| Sbjct 3542377 CCACCACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTC 3542436 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | ||||| |||||| | |||||||||||||| ||| ||| Sbjct 3542437 AGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGG 3542496 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128 || ||||||||||| || ||| ||| ||| |||| ||||| || | || ||| || Sbjct 3542497 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTC-CGATGGTTCAAC 3542555 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAA 15188 || | ||| |||||||| || || ||||| || || ||||||||||| | |||| || Sbjct 3542556 CTCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCATGATGAAAATCAA 3542615 Query 15189 TT 15190 || Sbjct 3542616 TT 3542617 Score = 158 bits (174), Expect = 9e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || || || || ||||||||||| |||||||| || || ||||| ||| Sbjct 3541801 CCACCACGAAGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTG 3541860 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| || | ||||| |||||| | |||||||| |||||||| ||| Sbjct 3541861 AGAGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGG 3541920 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| ||| || |||| |||||||| | ||| || Sbjct 3541921 ATACCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACC 3541980 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | |||||||| ||||| || ||||||||||| ||||||||||| Sbjct 3541981 TCAAGTGTAATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || ||| |||||||| | || || ||||| || |||||||| || Sbjct 3541573 CCACCACGAAGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAA 3541632 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | || || | ||||| |||||| | || | ||||||||| || ||| Sbjct 3541633 AGGGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGG 3541692 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||||| || ||| |||| || || ||| | ||| || Sbjct 3541693 ATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACT 3541752 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| ||||||||||| || || ||||| || |||||||||||| Sbjct 3541753 TCCAAGGTGATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCATA 3541800 Score = 118 bits (130), Expect = 8e-22 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTA 15044 ||||||| || || ||||| || ||| || | ||||| | |||||| |||||| | Sbjct 3542186 CTTTTTGGATATTATAATCA--GATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAA 3542243 Query 15045 TATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAAT 15104 |||||||| ||||||||| ||||| ||||||||||| ||||| || || | Sbjct 3542244 GATCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTT 3542303 Query 15105 TTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTAC 15164 ||| || |||||| | ||| || || || ||||||||||| || || || ||||| || Sbjct 3542304 TTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAAC 3542363 Query 15165 AAAAATTTGCATA 15177 |||||||||||| Sbjct 3542364 GAAAATTTGCATA 3542376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357389207986685