Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq444 163 2e-35
>seq444
Length=5217058
Score = 163 bits (180), Expect = 2e-35
Identities = 183/242 (76%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | || ||| || || ||||||||||| |||||||| ||||||||||||||
Sbjct 3542377 CCACCACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTC 3542436
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | ||||| | ||||| |||||| | |||||||||||||| ||| |||
Sbjct 3542437 AGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGG 3542496
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128
|| ||||||||||| || ||| ||| ||| |||| ||||| || | || ||| ||
Sbjct 3542497 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTC-CGATGGTTCAAC 3542555
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAA 15188
|| | ||| |||||||| || || ||||| || || ||||||||||| | |||| ||
Sbjct 3542556 CTCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCATGATGAAAATCAA 3542615
Query 15189 TT 15190
||
Sbjct 3542616 TT 3542617
Score = 158 bits (174), Expect = 9e-34
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | || || || || ||||||||||| |||||||| || || ||||| |||
Sbjct 3541801 CCACCACGAAGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTG 3541860
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | | |||| || | ||||| |||||| | |||||||| |||||||| |||
Sbjct 3541861 AGAGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGG 3541920
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||| ||||| |||||| ||| || |||| |||||||| | ||| ||
Sbjct 3541921 ATACCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACC 3541980
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | |||||||| ||||| || ||||||||||| |||||||||||
Sbjct 3541981 TCAAGTGTAATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | || ||| |||||||| | || || ||||| || |||||||| ||
Sbjct 3541573 CCACCACGAAGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAA 3541632
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| ||| | || || | ||||| |||||| | || | ||||||||| || |||
Sbjct 3541633 AGGGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGG 3541692
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|||||||||||||| ||||| || ||| |||| || || ||| | ||| ||
Sbjct 3541693 ATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACT 3541752
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| ||||| ||||||||||| || || ||||| || ||||||||||||
Sbjct 3541753 TCCAAGGTGATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCATA 3541800
Score = 118 bits (130), Expect = 8e-22
Identities = 143/193 (74%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTA 15044
||||||| || || ||||| || ||| || | ||||| | |||||| |||||| |
Sbjct 3542186 CTTTTTGGATATTATAATCA--GATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAA 3542243
Query 15045 TATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAAT 15104
|||||||| ||||||||| ||||| ||||||||||| ||||| || || |
Sbjct 3542244 GATCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTT 3542303
Query 15105 TTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTAC 15164
||| || |||||| | ||| || || || ||||||||||| || || || ||||| ||
Sbjct 3542304 TTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAAC 3542363
Query 15165 AAAAATTTGCATA 15177
||||||||||||
Sbjct 3542364 GAAAATTTGCATA 3542376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357389207986685
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |