Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq444 118 1e-21 >seq444 Length=5217058 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | || || || ||||| ||||| ||||||||||| Sbjct 3541798 ATACCACCACGAAGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCA 3541857 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| || | || || | ||||| || ||| | ||||| ||||| ||||| || Sbjct 3541858 CTGAGAGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGT 3541917 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| ||||| ||| | ||| | || || |||| || Sbjct 3541918 GGGATACCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCA 3541977 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || || || || ||||||||||| ||||||||||| Sbjct 3541978 ACCTCAAGTGTAATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 45153 TTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATC 45212 ||||||||||||||||| | || ||| || | ||||||||| ||| | ||| Sbjct 3542188 TTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGATC 3542247 Query 45213 AATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCT 45272 || ||||| ||||| || ||||| ||||| || || || ||||| |||| ||| Sbjct 3542248 AAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCA 3542307 Query 45273 ACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAA 45332 | ||| ||||||| || ||||| | ||||| ||||| || || || ||||| || ||| Sbjct 3542308 ATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGAAA 3542367 Query 45333 ATTTGCAT 45340 |||||||| Sbjct 3542368 ATTTGCAT 3542375 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188 || |||| ||| | |||||||| || || || || || || | |||| | ||| Sbjct 3541588 AATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCATCC 3541647 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | ||||| || ||| | || | || || || || || || || ||||| || ||| Sbjct 3541648 TCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCT 3541707 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || ||||| |||| ||| | ||||||||||| || ||||| | || | ||| Sbjct 3541708 TGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATGGTT 3541767 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||| || ||||||||||| Sbjct 3541768 TTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451999578324360