Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq478 87.8 2e-12 >seq478 Length=629985 Score = 87.8 bits (96), Expect = 2e-12 Identities = 210/313 (67%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 ||||||| ||||||||||| | |||||||| | |||||||||||| ||| | ||| Sbjct 272619 AACCTGTACCAATACCTTCAGCACCGTTCACCAAAACCATTGGAAGAACTGGTACATAAT 272560 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | || ||||||| || |||||| | | ||| ||||| | || |||| | | Sbjct 272559 ATTCGGGTTCAACTTTACTGTTATCATCATATAGATAATTGAGTAAAGGATCAT--CAAG 272502 Query 175866 GAT--CAAAGATTTTACGAGCATCCTTG-GTGAGTTTTGTGAAGATGTACCTCGTTTGAG 175922 || ||| ||||||||||| | | | | | || ||||| ||||| | | | Sbjct 272501 TATGGGAAATATTTTACGAGC-TAATGGACTTAACTTAGTGAAAATGTAACGAGGACTGG 272443 Query 175923 ACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGA 175982 ||||||||| ||||| | | ||| || |||||||||||| ||| || || || | Sbjct 272442 CCGCATCTTTACCACCAAGTAAACGTGTACCAAATTGACCAAGGGGCATGAGAAGGTTAA 272383 Query 175983 TATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTT 176042 ||||||| || | | | | | ||||| || | ||| || || || || ||| Sbjct 272382 TATTGTTGCTTCCAACAAAATTTTGAGCCAAATTTATAATAGTTGCCATAAGTGAAGCTT 272323 Query 176043 CACCGTGATGGTA 176055 |||| ||||| || Sbjct 272322 CACCATGATGATA 272310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613502284273560