Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq444 120 3e-22
>seq444
Length=5217058
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| ||||| ||||| || |||||||||||| | || || || | ||
Sbjct 3541799 ATGCAAATTTTCGTCAAAACCCTCACTGGTAAAACCATCACCTTGGAAGTTGAACCTTCC 3541740
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | ||| | || | ||||||| ||||| || ||||| || | || |||
Sbjct 3541739 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCTGATCAA 3541680
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| ||||| | ||| || |||||||| || || | || ||||| |||||||||
Sbjct 3541679 CAGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACCCTTTCTGACTACAAC 3541620
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGT 38452
|| || || ||| | || | ||||| ||
Sbjct 3541619 ATTCAGAAAGAATCAACTTTACATTTAGT 3541591
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || || |||||||||||| | || || || | |
Sbjct 3542603 ATGCAAATTTTCGTCAAGACTCTTACTGGAAAAACCATCACCCTTGAGGTTGAACCATCG 3542544
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | ||| |||||| || |||| ||||| || || || || |||| |||
Sbjct 3542543 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 3542484
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | ||| || |||||||| || || | || ||||| | ||| ||||||
Sbjct 3542483 CAGCGTTTGATCTTCGCTGGTAAACAGCTTGAAGATGGACGTACCCTGAGCGATTACAAC 3542424
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGT 38452
|| ||||| || | || || || |||||
Sbjct 3542423 ATTCAAAAAGAGTCTACCCTTCACTTGGT 3542395
Score = 100 bits (110), Expect = 3e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||||| ||||||||||| || || || || ||||| || | || || || | |
Sbjct 3542028 AATGCAAATTTTCGTAAAAACTCTTACTGGTAAGACCATTACACTTGAGGTTGAACCTTC 3541969
Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | || ||||| | |||| ||||||| |||||||| || || || | ||||
Sbjct 3541968 TGATACTATTGAAAACG-TGAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACC 3541910
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
|||| || | || | ||| || |||||||| || |||| || || |||| || || |
Sbjct 3541909 AACAACGTTTGATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACTCTCAGTGATTATA 3541850
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
| || ||||| ||| | || || || ||||| ||||
Sbjct 3541849 ATATTCAAAAAGAATCTACCCTTCACTTGGTCTTGCG 3541813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500168792365440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |