Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq442 150 2e-31 seq468 114 2e-20 seq453 114 2e-20 seq450 98.7 1e-15 >seq442 Length=7801961 Score = 150 bits (166), Expect = 2e-31 Identities = 607/950 (64%), Gaps = 17/950 (2%) Strand=Plus/Minus Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364 || |||||| || ||||||||||| ||||| ||||| ||||| ||||| || Sbjct 3252662 GAAACTGGTGTTCCGTATATGCTTTATAAAGATCATTGTAATGAAAAGTCCAATCAGAAA 3252603 Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424 ||| | || |||||| |||| || || || || ||||| | |||| || | | Sbjct 3252602 AATCTTGGAACCATCAAGTGTTCAAATCTGTGCACTGAAATTGTTGAATATAGTGCCCCT 3252543 Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 112484 ||||| ||||| ||||| || || || || || | || | ||| | | ||| Sbjct 3252542 GATGAAGTTGCTGTTTGTAATCTTGCCTCTATAGCCTTGAAAAAATTTGT---TACCGAG 3252486 Query 112485 ACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTA 112544 | | | |||||||| || || |||| | |||||||| ||| | |||||| ||| || Sbjct 3252485 GAACAAAAATTTGATTTTGCAAGACTCAAAGAAGTTACCAAAGCGGTCACACGAAATTTA 3252426 Query 112545 AACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGA 112604 |||| | ||||||| | || ||||| || | || || | | || || | | Sbjct 3252425 AACAAAATTATTGAGATCAACTTTTATCCTCTAAAGGAAGCCTCTTATTCAAACAAAAAG 3252366 Query 112605 CACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 112664 | || || ||||| | || || ||||| | || || | ||| || | | | Sbjct 3252365 AATCGACCTATTGGCTTAGGAGTTCAAGGCTTAGCAGACGCATTTCTTTTAATGAGATAT 3252306 Query 112665 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCAC 112724 ||||||| | ||||| || | |||| | || ||||||||||| ||| | Sbjct 3252305 CCATTTGACAGCCCAGAAGCTCGTAAATTGAATGTCCAAATCTTTGAGACAATCTATTAT 3252246 Query 112725 GCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 112784 | ||||| || || |||| ||| | || || | || || || ||||| | || Sbjct 3252245 GGAGCTCTCGAAGCAAGTTGTGAGCTCGCTGAAGAACTCGGACCTTACGAAACTTATGCA 3252186 Query 112785 GGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT- 112843 || ||||| ||||| ||||| | | |||| ||||||||||| || | ||| | || Sbjct 3252185 GGATCTCCCGCTTCTAAAGGGATTTTGCAATATGATATGTGGG-GTGTAACACC-ATCTA 3252128 Query 112844 -TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 112902 || | |||||| | || ||| || | | |||||||| ||||||| Sbjct 3252127 ATCTGTGGGACTGGACAGAGCTGAAGAGTAAAATTGCTAAACATGGTCTTCGAAACAGTC 3252068 Query 112903 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 112962 | || | || || ||||| ||||| || || || || || ||||| || || |||| Sbjct 3252067 TGTTATTAGCGCCCATGCCTACAGCATCAACTGCTCAGATTTTGGGGAACAACGAATCTA 3252008 Query 112963 TTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTG 113022 ||||||| || || | ||||||||| || || || | || || ||| | | Sbjct 3252007 TTGAACCATATACAAGTAACATCTATACTCGACGAGTTCTTTCTGGTGAATTTCAAGTAG 3251948 Query 113023 TCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 113082 | ||| | ||||| || | || | | || | || ||| | || |||| | Sbjct 3251947 TTAACCACCATCTTGTCAAAGATTTGACTGATCGAGAACTTTGGAATGAAGACATGAGAG 3251888 Query 113083 ATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTA 113142 | | || | | | || ||||||||| ||||| | ||| ||||| || |||| Sbjct 3251887 AACAGATTATTTATCACAGAGGCTCCATTCAAGCTATTGAAGGTATCCCAGAGGATATTA 3251828 Query 113143 AGAAGTTGTACCGCACAGTTTGGGAAA----TCAAGATGAAGGATGTCATTGACATGGCC 113198 || | ||||| || || |||||||||| |||| || || | | || ||||| Sbjct 3251827 AGCAATTGTATCGAACTGTTTGGGAAATTCCTCAA----AAAAATATTCTGGAAATGGCT 3251772 Query 113199 GCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCAT 113248 || || ||||| || ||||||||||||||| | | || ||||||| Sbjct 3251771 GCTGAACGTGGAGCTTTTATTGATCAAAGTCAATCTTTAAA--TATTCAT 3251724 >seq468 Length=1118636 Score = 114 bits (126), Expect = 2e-20 Identities = 372/570 (65%), Gaps = 22/570 (4%) Strand=Plus/Minus Query 101756 TGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAA 101815 ||||||||| | ||||||| | | |||||| | |||||||| ||| || | | Sbjct 1106857 TGTGTTCCCTATTGAGTATCCTGATATTTGGGAAATGTATAAGAAAGCTGAA--GCCTCG 1106800 Query 101816 TT--GGACTGCTGAAGAGGTAGA--TCTCTCAAAGGATTTGGACGATTGGAAGACTCTAA 101871 || |||||| ||||||||| || | |||| | ||||| || ||| | || | Sbjct 1106799 TTCTGGACTGTTGAAGAGGTTGACTTATCTCGA--GATTTAACTGACTGGGCTAAGCTTA 1106742 Query 101872 ATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAA 101931 | || | ||| | || || | || | |||||||||| ||| || || || | Sbjct 1106741 ACGATGAAGAACGTCATTTTATCAGCTATGTGTTGGCATTCTTCTCTGCCTCAGACGGTA 1106682 Query 101932 TTGTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGAT 101991 |||| ||| ||| | | | | ||| | ||| | || | ||||| ||| Sbjct 1106681 TTGTAAATGAAAATTTAGCTGAAAGATTTATTCGTGATATCCAGATTACCGAAGCTCGAT 1106622 Query 101992 CTTTCTATGCGTATCAATGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCA 102051 ||| |||| | |||| | | ||| | ||||| |||| ||||| ||| | Sbjct 1106621 GTTTTTATGGTTTTCAAATTGCGATTGAGAATGTGCACTCTGAGATGTACAGCCTACTGA 1106562 Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAG 102111 |||||| || || | ||| || || | || || || |||| || |||| | Sbjct 1106561 TAGACACTTACATCAGTGATCCTGACCAGCGGGAGTTTCTTTTCAAAGCTATTGAAACTG 1106502 Query 102112 TTCCATGTATT---CAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTG---ATACAA-AG 102164 | |||||| || |||||| || || ||||| || || ||| || || || || Sbjct 1106501 TCCCATGTGTTGCTCAAAAG---GCTGAATGGGCAATAAACTGGACTGCAAATCCATCAG 1106445 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 || || ||||| || || | | || ||||| |||||||| |||||||| ||||| Sbjct 1106444 TC----TCTTTTGCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCA 1106389 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 || || ||| |||||| | |||||| || ||||| || || ||||||||| | ||| Sbjct 1106388 GGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTC 1106329 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGA 102314 || ||||| ||||||||||| || || ||| Sbjct 1106328 TCTAACGAACTTATCTCTCGAGATGAAGGA 1106299 >seq453 Length=2394413 Score = 114 bits (126), Expect = 2e-20 Identities = 372/570 (65%), Gaps = 22/570 (4%) Strand=Plus/Minus Query 101756 TGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAA 101815 ||||||||| | ||||||| | | |||||| | |||||||| ||| || | | Sbjct 12309 TGTGTTCCCTATTGAGTATCCTGATATTTGGGAAATGTATAAGAAAGCTGAA--GCCTCG 12252 Query 101816 TT--GGACTGCTGAAGAGGTAGA--TCTCTCAAAGGATTTGGACGATTGGAAGACTCTAA 101871 || |||||| ||||||||| || | |||| | ||||| || ||| | || | Sbjct 12251 TTCTGGACTGTTGAAGAGGTTGACTTATCTCGA--GATTTAACTGACTGGGCTAAGCTTA 12194 Query 101872 ATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAA 101931 | || | ||| | || || | || | |||||||||| ||| || || || | Sbjct 12193 ACGATGAAGAACGTCATTTTATCAGCTATGTGTTGGCATTCTTCTCTGCCTCAGACGGTA 12134 Query 101932 TTGTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGAT 101991 |||| ||| ||| | | | | ||| | ||| | || | ||||| ||| Sbjct 12133 TTGTAAATGAAAATTTAGCTGAAAGATTTATTCGTGATATCCAGATTACCGAAGCTCGAT 12074 Query 101992 CTTTCTATGCGTATCAATGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCA 102051 ||| |||| | |||| | | ||| | ||||| |||| ||||| ||| | Sbjct 12073 GTTTTTATGGTTTTCAAATTGCGATTGAGAATGTGCACTCTGAGATGTACAGCCTACTGA 12014 Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAG 102111 |||||| || || | ||| || || | || || || |||| || |||| | Sbjct 12013 TAGACACTTACATCAGTGATCCTGACCAGCGGGAGTTTCTTTTCAAAGCTATTGAAACTG 11954 Query 102112 TTCCATGTATT---CAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTG---ATACAA-AG 102164 | |||||| || |||||| || || ||||| || || ||| || || || || Sbjct 11953 TCCCATGTGTTGCTCAAAAG---GCTGAATGGGCAATAAACTGGACTGCAAATCCATCAG 11897 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 || || ||||| || || | | || ||||| |||||||| |||||||| ||||| Sbjct 11896 TC----TCTTTTGCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCA 11841 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 || || ||| |||||| | |||||| || ||||| || || ||||||||| | ||| Sbjct 11840 GGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTC 11781 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGA 102314 || ||||| ||||||||||| || || ||| Sbjct 11780 TCTAACGAACTTATCTCTCGAGATGAAGGA 11751 >seq450 Length=3639652 Score = 98.7 bits (108), Expect = 1e-15 Identities = 220/325 (68%), Gaps = 8/325 (2%) Strand=Plus/Plus Query 13625 TGGTAAGGTTAAGGAGTCACCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTCTA 13684 |||||| || | || ||||||||| || | ||||| ||||| ||| | ||| || Sbjct 785461 TGGTAAAGTCCAAGAAATACCACAAAATGAAAAAACACCTTTCTATCCAAGATCGCCTTA 785520 Query 13685 CGGAGT--CTCAAAGGTTGCGGCACATTGGCTCGTAAAGAATTACCGCGAGTCTTACGGA 13742 ||| || || || || | || ||| | || || || || || | ||| Sbjct 785521 CGGTGTTGCTAAATTGTATGGTTAC--TGGATAGTTGTCAACTATCGTGAAGCATACAAC 785578 Query 13743 CTGTTTGCATGCTCCGGAATCCTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTT 13802 |||||||| | || || | || || |||||| || ||| |||||| | ||| Sbjct 785579 ATGTTTGCAGTCAATGGTATTTTATTTAATCATGAAAGCCCTAGAAGAGGTGAAACTTTT 785638 Query 13803 GTGACCATGAAGATTACC-GAGG-GTATCAAACAAATCATGAAGGGTGAAAAGGAGTTCA 13860 || ||| || ||||| |||| || | || | || | ||||| ||| | | Sbjct 785639 GTTACCCGTAAAATTACTAGAGGTGTTGCCAAGATTTCT--ATCGGTGAGTTGGACTATA 785696 Query 13861 TTGAATTGGGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAG 13920 | ||| | |||||| || |||| | ||||| |||||||| ||||| || |||||||||| Sbjct 785697 TCGAACTAGGTAACTTAGACGCCAAAAGAGACTGGGGTCATGCGAAAGATTATGTTGAAG 785756 Query 13921 CTATGTGGCTCATGCTTCAACAAGA 13945 ||||||||||||||||||| ||||| Sbjct 785757 CTATGTGGCTCATGCTTCAGCAAGA 785781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620737426301520