Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq442 150 2e-31
seq468 114 2e-20
seq453 114 2e-20
seq450 98.7 1e-15
>seq442
Length=7801961
Score = 150 bits (166), Expect = 2e-31
Identities = 607/950 (64%), Gaps = 17/950 (2%)
Strand=Plus/Minus
Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364
|| |||||| || ||||||||||| ||||| ||||| ||||| ||||| ||
Sbjct 3252662 GAAACTGGTGTTCCGTATATGCTTTATAAAGATCATTGTAATGAAAAGTCCAATCAGAAA 3252603
Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424
||| | || |||||| |||| || || || || ||||| | |||| || | |
Sbjct 3252602 AATCTTGGAACCATCAAGTGTTCAAATCTGTGCACTGAAATTGTTGAATATAGTGCCCCT 3252543
Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 112484
||||| ||||| ||||| || || || || || | || | ||| | | |||
Sbjct 3252542 GATGAAGTTGCTGTTTGTAATCTTGCCTCTATAGCCTTGAAAAAATTTGT---TACCGAG 3252486
Query 112485 ACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTA 112544
| | | |||||||| || || |||| | |||||||| ||| | |||||| ||| ||
Sbjct 3252485 GAACAAAAATTTGATTTTGCAAGACTCAAAGAAGTTACCAAAGCGGTCACACGAAATTTA 3252426
Query 112545 AACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGA 112604
|||| | ||||||| | || ||||| || | || || | | || || | |
Sbjct 3252425 AACAAAATTATTGAGATCAACTTTTATCCTCTAAAGGAAGCCTCTTATTCAAACAAAAAG 3252366
Query 112605 CACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 112664
| || || ||||| | || || ||||| | || || | ||| || | | |
Sbjct 3252365 AATCGACCTATTGGCTTAGGAGTTCAAGGCTTAGCAGACGCATTTCTTTTAATGAGATAT 3252306
Query 112665 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCAC 112724
||||||| | ||||| || | |||| | || ||||||||||| ||| |
Sbjct 3252305 CCATTTGACAGCCCAGAAGCTCGTAAATTGAATGTCCAAATCTTTGAGACAATCTATTAT 3252246
Query 112725 GCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 112784
| ||||| || || |||| ||| | || || | || || || ||||| | ||
Sbjct 3252245 GGAGCTCTCGAAGCAAGTTGTGAGCTCGCTGAAGAACTCGGACCTTACGAAACTTATGCA 3252186
Query 112785 GGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT- 112843
|| ||||| ||||| ||||| | | |||| ||||||||||| || | ||| | ||
Sbjct 3252185 GGATCTCCCGCTTCTAAAGGGATTTTGCAATATGATATGTGGG-GTGTAACACC-ATCTA 3252128
Query 112844 -TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 112902
|| | |||||| | || ||| || | | |||||||| |||||||
Sbjct 3252127 ATCTGTGGGACTGGACAGAGCTGAAGAGTAAAATTGCTAAACATGGTCTTCGAAACAGTC 3252068
Query 112903 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 112962
| || | || || ||||| ||||| || || || || || ||||| || || ||||
Sbjct 3252067 TGTTATTAGCGCCCATGCCTACAGCATCAACTGCTCAGATTTTGGGGAACAACGAATCTA 3252008
Query 112963 TTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTG 113022
||||||| || || | ||||||||| || || || | || || ||| | |
Sbjct 3252007 TTGAACCATATACAAGTAACATCTATACTCGACGAGTTCTTTCTGGTGAATTTCAAGTAG 3251948
Query 113023 TCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 113082
| ||| | ||||| || | || | | || | || ||| | || |||| |
Sbjct 3251947 TTAACCACCATCTTGTCAAAGATTTGACTGATCGAGAACTTTGGAATGAAGACATGAGAG 3251888
Query 113083 ATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTA 113142
| | || | | | || ||||||||| ||||| | ||| ||||| || ||||
Sbjct 3251887 AACAGATTATTTATCACAGAGGCTCCATTCAAGCTATTGAAGGTATCCCAGAGGATATTA 3251828
Query 113143 AGAAGTTGTACCGCACAGTTTGGGAAA----TCAAGATGAAGGATGTCATTGACATGGCC 113198
|| | ||||| || || |||||||||| |||| || || | | || |||||
Sbjct 3251827 AGCAATTGTATCGAACTGTTTGGGAAATTCCTCAA----AAAAATATTCTGGAAATGGCT 3251772
Query 113199 GCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCAT 113248
|| || ||||| || ||||||||||||||| | | || |||||||
Sbjct 3251771 GCTGAACGTGGAGCTTTTATTGATCAAAGTCAATCTTTAAA--TATTCAT 3251724
>seq468
Length=1118636
Score = 114 bits (126), Expect = 2e-20
Identities = 372/570 (65%), Gaps = 22/570 (4%)
Strand=Plus/Minus
Query 101756 TGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAA 101815
||||||||| | ||||||| | | |||||| | |||||||| ||| || | |
Sbjct 1106857 TGTGTTCCCTATTGAGTATCCTGATATTTGGGAAATGTATAAGAAAGCTGAA--GCCTCG 1106800
Query 101816 TT--GGACTGCTGAAGAGGTAGA--TCTCTCAAAGGATTTGGACGATTGGAAGACTCTAA 101871
|| |||||| ||||||||| || | |||| | ||||| || ||| | || |
Sbjct 1106799 TTCTGGACTGTTGAAGAGGTTGACTTATCTCGA--GATTTAACTGACTGGGCTAAGCTTA 1106742
Query 101872 ATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAA 101931
| || | ||| | || || | || | |||||||||| ||| || || || |
Sbjct 1106741 ACGATGAAGAACGTCATTTTATCAGCTATGTGTTGGCATTCTTCTCTGCCTCAGACGGTA 1106682
Query 101932 TTGTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGAT 101991
|||| ||| ||| | | | | ||| | ||| | || | ||||| |||
Sbjct 1106681 TTGTAAATGAAAATTTAGCTGAAAGATTTATTCGTGATATCCAGATTACCGAAGCTCGAT 1106622
Query 101992 CTTTCTATGCGTATCAATGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCA 102051
||| |||| | |||| | | ||| | ||||| |||| ||||| ||| |
Sbjct 1106621 GTTTTTATGGTTTTCAAATTGCGATTGAGAATGTGCACTCTGAGATGTACAGCCTACTGA 1106562
Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAG 102111
|||||| || || | ||| || || | || || || |||| || |||| |
Sbjct 1106561 TAGACACTTACATCAGTGATCCTGACCAGCGGGAGTTTCTTTTCAAAGCTATTGAAACTG 1106502
Query 102112 TTCCATGTATT---CAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTG---ATACAA-AG 102164
| |||||| || |||||| || || ||||| || || ||| || || || ||
Sbjct 1106501 TCCCATGTGTTGCTCAAAAG---GCTGAATGGGCAATAAACTGGACTGCAAATCCATCAG 1106445
Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224
|| || ||||| || || | | || ||||| |||||||| |||||||| |||||
Sbjct 1106444 TC----TCTTTTGCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCA 1106389
Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284
|| || ||| |||||| | |||||| || ||||| || || ||||||||| | |||
Sbjct 1106388 GGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTC 1106329
Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGA 102314
|| ||||| ||||||||||| || || |||
Sbjct 1106328 TCTAACGAACTTATCTCTCGAGATGAAGGA 1106299
>seq453
Length=2394413
Score = 114 bits (126), Expect = 2e-20
Identities = 372/570 (65%), Gaps = 22/570 (4%)
Strand=Plus/Minus
Query 101756 TGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAA 101815
||||||||| | ||||||| | | |||||| | |||||||| ||| || | |
Sbjct 12309 TGTGTTCCCTATTGAGTATCCTGATATTTGGGAAATGTATAAGAAAGCTGAA--GCCTCG 12252
Query 101816 TT--GGACTGCTGAAGAGGTAGA--TCTCTCAAAGGATTTGGACGATTGGAAGACTCTAA 101871
|| |||||| ||||||||| || | |||| | ||||| || ||| | || |
Sbjct 12251 TTCTGGACTGTTGAAGAGGTTGACTTATCTCGA--GATTTAACTGACTGGGCTAAGCTTA 12194
Query 101872 ATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAA 101931
| || | ||| | || || | || | |||||||||| ||| || || || |
Sbjct 12193 ACGATGAAGAACGTCATTTTATCAGCTATGTGTTGGCATTCTTCTCTGCCTCAGACGGTA 12134
Query 101932 TTGTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGAT 101991
|||| ||| ||| | | | | ||| | ||| | || | ||||| |||
Sbjct 12133 TTGTAAATGAAAATTTAGCTGAAAGATTTATTCGTGATATCCAGATTACCGAAGCTCGAT 12074
Query 101992 CTTTCTATGCGTATCAATGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCA 102051
||| |||| | |||| | | ||| | ||||| |||| ||||| ||| |
Sbjct 12073 GTTTTTATGGTTTTCAAATTGCGATTGAGAATGTGCACTCTGAGATGTACAGCCTACTGA 12014
Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAG 102111
|||||| || || | ||| || || | || || || |||| || |||| |
Sbjct 12013 TAGACACTTACATCAGTGATCCTGACCAGCGGGAGTTTCTTTTCAAAGCTATTGAAACTG 11954
Query 102112 TTCCATGTATT---CAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTG---ATACAA-AG 102164
| |||||| || |||||| || || ||||| || || ||| || || || ||
Sbjct 11953 TCCCATGTGTTGCTCAAAAG---GCTGAATGGGCAATAAACTGGACTGCAAATCCATCAG 11897
Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224
|| || ||||| || || | | || ||||| |||||||| |||||||| |||||
Sbjct 11896 TC----TCTTTTGCCGAAAGATTGATTGCCTTTGCATGTGTTGAAGGTATCTTTTTCTCA 11841
Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284
|| || ||| |||||| | |||||| || ||||| || || ||||||||| | |||
Sbjct 11840 GGCTCTTTCGCCGCTATCTTTTGGCTTAAAAAGCGTGGCCTGATGCCAGGTTTAACTTTC 11781
Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGA 102314
|| ||||| ||||||||||| || || |||
Sbjct 11780 TCTAACGAACTTATCTCTCGAGATGAAGGA 11751
>seq450
Length=3639652
Score = 98.7 bits (108), Expect = 1e-15
Identities = 220/325 (68%), Gaps = 8/325 (2%)
Strand=Plus/Plus
Query 13625 TGGTAAGGTTAAGGAGTCACCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTCTA 13684
|||||| || | || ||||||||| || | ||||| ||||| ||| | ||| ||
Sbjct 785461 TGGTAAAGTCCAAGAAATACCACAAAATGAAAAAACACCTTTCTATCCAAGATCGCCTTA 785520
Query 13685 CGGAGT--CTCAAAGGTTGCGGCACATTGGCTCGTAAAGAATTACCGCGAGTCTTACGGA 13742
||| || || || || | || ||| | || || || || || | |||
Sbjct 785521 CGGTGTTGCTAAATTGTATGGTTAC--TGGATAGTTGTCAACTATCGTGAAGCATACAAC 785578
Query 13743 CTGTTTGCATGCTCCGGAATCCTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTT 13802
|||||||| | || || | || || |||||| || ||| |||||| | |||
Sbjct 785579 ATGTTTGCAGTCAATGGTATTTTATTTAATCATGAAAGCCCTAGAAGAGGTGAAACTTTT 785638
Query 13803 GTGACCATGAAGATTACC-GAGG-GTATCAAACAAATCATGAAGGGTGAAAAGGAGTTCA 13860
|| ||| || ||||| |||| || | || | || | ||||| ||| | |
Sbjct 785639 GTTACCCGTAAAATTACTAGAGGTGTTGCCAAGATTTCT--ATCGGTGAGTTGGACTATA 785696
Query 13861 TTGAATTGGGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAG 13920
| ||| | |||||| || |||| | ||||| |||||||| ||||| || ||||||||||
Sbjct 785697 TCGAACTAGGTAACTTAGACGCCAAAAGAGACTGGGGTCATGCGAAAGATTATGTTGAAG 785756
Query 13921 CTATGTGGCTCATGCTTCAACAAGA 13945
||||||||||||||||||| |||||
Sbjct 785757 CTATGTGGCTCATGCTTCAGCAAGA 785781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620737426301520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |