Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq478 113 5e-20
seq468 113 5e-20
seq453 113 5e-20
seq442 96.9 4e-15
>seq478
Length=629985
Score = 113 bits (124), Expect = 5e-20
Identities = 334/501 (67%), Gaps = 22/501 (4%)
Strand=Plus/Minus
Query 167357 AACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAA 167416
|||| |||||||||||||||| |||||| ||||||||||| || ||| ||| | |||
Sbjct 272619 AACCTGTACCAATACCTTCAGCACCGTTCACCAAAACCATTGGAAGAACTGGTACATAAT 272560
Query 167417 AGTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAG-AATGG--CATCATCTT 167473
| |||||||||| || |||||||| | || ||||| || || ||||| |
Sbjct 272559 ATTCGGGTTCAACTTTACTGTTATCATCATATAGATAATTGAGTAAAGGATCATCAAGTA 272500
Query 167474 TGGGATCGAAGAGCTTTCGAGCCTCCTTG-GTAAGCTTCGTAAAGATGT-ACCTCGTCTG 167531
||||| || | || |||| || | | | | ||| || || |||| || | |||
Sbjct 272499 TGGGA---AATATTTTACGAG-CTAATGGACTTAACTTAGTGAAAATGTAACGAGGACTG 272444
Query 167532 AGACGCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATT 167591
| |||||| || ||||| | | |||||||||||||||||| ||| |||||| ||
Sbjct 272443 -GCCGCATCTTTACCACCAAGTAAACGTGTACCAAATTGACCAAGGGGCATGAGAAGGTT 272385
Query 167592 GATGTTATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGTTTCAGCGAGGGAAAC 167651
|| || || || | ||| | ||||| || | || ||| | || ||| |
Sbjct 272384 AATATTGTTGCTTCCAACAAAATTTTGAGCCAAATTTATAATAGTTGCCATAAGTGAAGC 272325
Query 167652 TTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCAT 167711
||| || || || ||| |||| | || | ||||| || ||||| || ||
Sbjct 272324 TTCACCATGATGATAACATGAAACTTCACCAACTGTACCAGCCAATTGAGCAACTTTGAT 272265
Query 167712 CTCATCTTTGAGATTCTTTTGGAAA---CATGAATACATAACCTTGCGTTGAGAAGGTTT 167768
|| | ||| ||| ||| ||||| |||||||| | || || ||||| |||||
Sbjct 272264 TTCTTTTTTAAGA---TTTCGGAAAAAGCATGAATAAAGTACTTTTCGTTGTCCTGGTTT 272208
Query 167769 GAGACCATCTGCCACGTGAGCAATTGAGCGCTTCA-GATCAGCAAG--ACTGAAATTCAC 167825
|| ||||| || | | ||| || || |||| ||| |||| ||||||| ||
Sbjct 272207 AAGGCCATCCATCATGGATGGAATAGATCG-TTCATTATC--CAAGTTACTGAAAAGTAC 272151
Query 167826 CAAGTCTTTGTGTACAAAATC 167846
|| ||||||| ||||||||
Sbjct 272150 TAACTCTTTGTTGACAAAATC 272130
>seq468
Length=1118636
Score = 113 bits (124), Expect = 5e-20
Identities = 465/726 (64%), Gaps = 7/726 (1%)
Strand=Plus/Plus
Query 119334 ACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACACGGGAGA 119393
||| |||| || |||| || |||| ||| ||||| ||||||||| | || |
Sbjct 1106120 ACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCTATGAGAGAAACTGGCAAT 1106179
Query 119394 GCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTGAATAGTT 119453
|| ||| | || |||| |||||| |||||||| ||| ||| || |||||| ||
Sbjct 1106180 GCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGCACTATTTCTTGAATAATT 1106239
Query 119454 TCTGTCGATGGTTTGTTTCTCAAGAG-TTTAAACAACTCTACGGCAAATTCTTGATGAAG 119512
| | || | | | ||| ||| | |||||| ||| |||||| || ||| |
Sbjct 1106240 TTT-TCACTCGGTCTTTTAACAACATATTTAAATAACAAACAGGCAAAATCACAATGTAA 1106298
Query 119513 CCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTT 119572
|||||||| |||||||| || || ||| ||| | || ||||| || || | ||
Sbjct 1106299 TCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCTGGCATCAGGCCACGCTT 1106358
Query 119573 CTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAA 119632
|| ||||||||||| || ||| || || || ||||| || || ||||| || ||
Sbjct 1106359 TTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATACCTTCAACACATGCAAA 1106418
Query 119633 AGCGAATAGACGCTCAGCAAAAG-GTC-GA--GACTTGTCGAACCACTTGAGAGCCCAGT 119688
|| | | | || ||||||| | | || || ||| | ||| || | ||||| |
Sbjct 1106419 GGCAATCAATCTTTCGGCAAAAGAGACTGATGGATTTG-CAGTCCAGTTTATTGCCCATT 1106477
Query 119689 TGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAG 119748
||||| | | | || |||||||||| || |||| |||||| || | |
Sbjct 1106478 CAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGT 1106537
Query 119749 CACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCAT 119808
|| ||| | || || | || || ||| ||| ||||| || || | |||
Sbjct 1106538 CAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTACATCTCAGAGTGCACATTCTCAA 1106597
Query 119809 TGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAAT 119868
| ||| | ||||||| | |||||||||| ||| || | || | |||
Sbjct 1106598 TCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTAATCTGGATATCACGAATAAATC 1106657
Query 119869 TGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACT 119928
| | | ||||||| ||||| || || || ||| ||||||||| || | ||
Sbjct 1106658 TTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCAGAGAAGAATGCCAACACATAGC 1106717
Query 119929 TTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATCTTTAGACAAGT 119988
| || || | |||| | |||||| || | |||||| | |||| ||| ||||
Sbjct 1106718 TGATAAAATGACGTTCTTCATCGTTAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGT 1106777
Query 119989 CCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTTCCCAAAGTTCAG 120048
| ||||||||| | |||||| || | || || ||||| | |||||||| ||||
Sbjct 1106778 CAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTTCTTATACATTTCCCAAATATCAG 1106837
Query 120049 GATACT 120054
||||||
Sbjct 1106838 GATACT 1106843
>seq453
Length=2394413
Score = 113 bits (124), Expect = 5e-20
Identities = 465/726 (64%), Gaps = 7/726 (1%)
Strand=Plus/Plus
Query 119334 ACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACACGGGAGA 119393
||| |||| || |||| || |||| ||| ||||| ||||||||| | || |
Sbjct 11572 ACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCTATGAGAGAAACTGGCAAT 11631
Query 119394 GCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTGAATAGTT 119453
|| ||| | || |||| |||||| |||||||| ||| ||| || |||||| ||
Sbjct 11632 GCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGCACTATTTCTTGAATAATT 11691
Query 119454 TCTGTCGATGGTTTGTTTCTCAAGAG-TTTAAACAACTCTACGGCAAATTCTTGATGAAG 119512
| | || | | | ||| ||| | |||||| ||| |||||| || ||| |
Sbjct 11692 TTT-TCACTCGGTCTTTTAACAACATATTTAAATAACAAACAGGCAAAATCACAATGTAA 11750
Query 119513 CCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTT 119572
|||||||| |||||||| || || ||| ||| | || ||||| || || | ||
Sbjct 11751 TCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCTGGCATCAGGCCACGCTT 11810
Query 119573 CTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAA 119632
|| ||||||||||| || ||| || || || ||||| || || ||||| || ||
Sbjct 11811 TTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATACCTTCAACACATGCAAA 11870
Query 119633 AGCGAATAGACGCTCAGCAAAAG-GTC-GA--GACTTGTCGAACCACTTGAGAGCCCAGT 119688
|| | | | || ||||||| | | || || ||| | ||| || | ||||| |
Sbjct 11871 GGCAATCAATCTTTCGGCAAAAGAGACTGATGGATTTG-CAGTCCAGTTTATTGCCCATT 11929
Query 119689 TGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAG 119748
||||| | | | || |||||||||| || |||| |||||| || | |
Sbjct 11930 CAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGT 11989
Query 119749 CACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCAT 119808
|| ||| | || || | || || ||| ||| ||||| || || | |||
Sbjct 11990 CAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTACATCTCAGAGTGCACATTCTCAA 12049
Query 119809 TGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAAT 119868
| ||| | ||||||| | |||||||||| ||| || | || | |||
Sbjct 12050 TCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTAATCTGGATATCACGAATAAATC 12109
Query 119869 TGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACT 119928
| | | ||||||| ||||| || || || ||| ||||||||| || | ||
Sbjct 12110 TTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCAGAGAAGAATGCCAACACATAGC 12169
Query 119929 TTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATCTTTAGACAAGT 119988
| || || | |||| | |||||| || | |||||| | |||| ||| ||||
Sbjct 12170 TGATAAAATGACGTTCTTCATCGTTAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGT 12229
Query 119989 CCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTTCCCAAAGTTCAG 120048
| ||||||||| | |||||| || | || || ||||| | |||||||| ||||
Sbjct 12230 CAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTTCTTATACATTTCCCAAATATCAG 12289
Query 120049 GATACT 120054
||||||
Sbjct 12290 GATACT 12295
>seq442
Length=7801961
Score = 96.9 bits (106), Expect = 4e-15
Identities = 215/323 (67%), Gaps = 0/323 (0%)
Strand=Plus/Plus
Query 109531 CCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTAC 109590
||||| ||||| ||||| || | ||| ||||| ||||||||| ||||| |||
Sbjct 3251761 CCACGTTCAGCAGCCATTTCCAGAATATTTTTTTGAGGAATTTCCCAAACAGTTCGATAC 3251820
Query 109591 AAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACC 109650
|| | ||| ||||| || || || | | || |||||| ||||| | | |
Sbjct 3251821 AATTGCTTAATATCCTCTGGGATACCTTCAATAGCTTGAATGGAGCCTCTGTGATAAATA 3251880
Query 109651 ATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGC 109710
|| | || |||| |||| ||| || | | | | ||| | ||||||||
Sbjct 3251881 ATCTGTTCTCTCATGTCTTCATTCCAAAGTTCTCGATCAGTCAAATCTTTGACAAGATGG 3251940
Query 109711 TTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAG 109770
| ||| || || ||||||||||| ||| ||||| ||||||||| | || ||
Sbjct 3251941 TGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATAGATGTTACTTGTATAT 3252000
Query 109771 GGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCC 109830
||||| | | | || ||||| || | || || ||||| || ||||| |||||||| ||
Sbjct 3252001 GGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGGCATGGGCGCT 3252060
Query 109831 ATGAGAAGACTGTTTCGGAGACC 109853
| | ||||||||||| |||||
Sbjct 3252061 AATAACAGACTGTTTCGAAGACC 3252083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588971280829800
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