Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq478 113 5e-20 seq468 113 5e-20 seq453 113 5e-20 seq442 96.9 4e-15 >seq478 Length=629985 Score = 113 bits (124), Expect = 5e-20 Identities = 334/501 (67%), Gaps = 22/501 (4%) Strand=Plus/Minus Query 167357 AACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAA 167416 |||| |||||||||||||||| |||||| ||||||||||| || ||| ||| | ||| Sbjct 272619 AACCTGTACCAATACCTTCAGCACCGTTCACCAAAACCATTGGAAGAACTGGTACATAAT 272560 Query 167417 AGTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAG-AATGG--CATCATCTT 167473 | |||||||||| || |||||||| | || ||||| || || ||||| | Sbjct 272559 ATTCGGGTTCAACTTTACTGTTATCATCATATAGATAATTGAGTAAAGGATCATCAAGTA 272500 Query 167474 TGGGATCGAAGAGCTTTCGAGCCTCCTTG-GTAAGCTTCGTAAAGATGT-ACCTCGTCTG 167531 ||||| || | || |||| || | | | | ||| || || |||| || | ||| Sbjct 272499 TGGGA---AATATTTTACGAG-CTAATGGACTTAACTTAGTGAAAATGTAACGAGGACTG 272444 Query 167532 AGACGCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATT 167591 | |||||| || ||||| | | |||||||||||||||||| ||| |||||| || Sbjct 272443 -GCCGCATCTTTACCACCAAGTAAACGTGTACCAAATTGACCAAGGGGCATGAGAAGGTT 272385 Query 167592 GATGTTATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGTTTCAGCGAGGGAAAC 167651 || || || || | ||| | ||||| || | || ||| | || ||| | Sbjct 272384 AATATTGTTGCTTCCAACAAAATTTTGAGCCAAATTTATAATAGTTGCCATAAGTGAAGC 272325 Query 167652 TTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCAT 167711 ||| || || || ||| |||| | || | ||||| || ||||| || || Sbjct 272324 TTCACCATGATGATAACATGAAACTTCACCAACTGTACCAGCCAATTGAGCAACTTTGAT 272265 Query 167712 CTCATCTTTGAGATTCTTTTGGAAA---CATGAATACATAACCTTGCGTTGAGAAGGTTT 167768 || | ||| ||| ||| ||||| |||||||| | || || ||||| ||||| Sbjct 272264 TTCTTTTTTAAGA---TTTCGGAAAAAGCATGAATAAAGTACTTTTCGTTGTCCTGGTTT 272208 Query 167769 GAGACCATCTGCCACGTGAGCAATTGAGCGCTTCA-GATCAGCAAG--ACTGAAATTCAC 167825 || ||||| || | | ||| || || |||| ||| |||| ||||||| || Sbjct 272207 AAGGCCATCCATCATGGATGGAATAGATCG-TTCATTATC--CAAGTTACTGAAAAGTAC 272151 Query 167826 CAAGTCTTTGTGTACAAAATC 167846 || ||||||| |||||||| Sbjct 272150 TAACTCTTTGTTGACAAAATC 272130 >seq468 Length=1118636 Score = 113 bits (124), Expect = 5e-20 Identities = 465/726 (64%), Gaps = 7/726 (1%) Strand=Plus/Plus Query 119334 ACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACACGGGAGA 119393 ||| |||| || |||| || |||| ||| ||||| ||||||||| | || | Sbjct 1106120 ACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCTATGAGAGAAACTGGCAAT 1106179 Query 119394 GCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTGAATAGTT 119453 || ||| | || |||| |||||| |||||||| ||| ||| || |||||| || Sbjct 1106180 GCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGCACTATTTCTTGAATAATT 1106239 Query 119454 TCTGTCGATGGTTTGTTTCTCAAGAG-TTTAAACAACTCTACGGCAAATTCTTGATGAAG 119512 | | || | | | ||| ||| | |||||| ||| |||||| || ||| | Sbjct 1106240 TTT-TCACTCGGTCTTTTAACAACATATTTAAATAACAAACAGGCAAAATCACAATGTAA 1106298 Query 119513 CCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTT 119572 |||||||| |||||||| || || ||| ||| | || ||||| || || | || Sbjct 1106299 TCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCTGGCATCAGGCCACGCTT 1106358 Query 119573 CTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAA 119632 || ||||||||||| || ||| || || || ||||| || || ||||| || || Sbjct 1106359 TTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATACCTTCAACACATGCAAA 1106418 Query 119633 AGCGAATAGACGCTCAGCAAAAG-GTC-GA--GACTTGTCGAACCACTTGAGAGCCCAGT 119688 || | | | || ||||||| | | || || ||| | ||| || | ||||| | Sbjct 1106419 GGCAATCAATCTTTCGGCAAAAGAGACTGATGGATTTG-CAGTCCAGTTTATTGCCCATT 1106477 Query 119689 TGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAG 119748 ||||| | | | || |||||||||| || |||| |||||| || | | Sbjct 1106478 CAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGT 1106537 Query 119749 CACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCAT 119808 || ||| | || || | || || ||| ||| ||||| || || | ||| Sbjct 1106538 CAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTACATCTCAGAGTGCACATTCTCAA 1106597 Query 119809 TGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAAT 119868 | ||| | ||||||| | |||||||||| ||| || | || | ||| Sbjct 1106598 TCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTAATCTGGATATCACGAATAAATC 1106657 Query 119869 TGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACT 119928 | | | ||||||| ||||| || || || ||| ||||||||| || | || Sbjct 1106658 TTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCAGAGAAGAATGCCAACACATAGC 1106717 Query 119929 TTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATCTTTAGACAAGT 119988 | || || | |||| | |||||| || | |||||| | |||| ||| |||| Sbjct 1106718 TGATAAAATGACGTTCTTCATCGTTAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGT 1106777 Query 119989 CCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTTCCCAAAGTTCAG 120048 | ||||||||| | |||||| || | || || ||||| | |||||||| |||| Sbjct 1106778 CAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTTCTTATACATTTCCCAAATATCAG 1106837 Query 120049 GATACT 120054 |||||| Sbjct 1106838 GATACT 1106843 >seq453 Length=2394413 Score = 113 bits (124), Expect = 5e-20 Identities = 465/726 (64%), Gaps = 7/726 (1%) Strand=Plus/Plus Query 119334 ACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACACGGGAGA 119393 ||| |||| || |||| || |||| ||| ||||| ||||||||| | || | Sbjct 11572 ACAAACTCAATGTATTGGGCCATCATTTTGTTGTTCATTCCTATGAGAGAAACTGGCAAT 11631 Query 119394 GCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTGAATAGTT 119453 || ||| | || |||| |||||| |||||||| ||| ||| || |||||| || Sbjct 11632 GCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGCATCTCGCACTATTTCTTGAATAATT 11691 Query 119454 TCTGTCGATGGTTTGTTTCTCAAGAG-TTTAAACAACTCTACGGCAAATTCTTGATGAAG 119512 | | || | | | ||| ||| | |||||| ||| |||||| || ||| | Sbjct 11692 TTT-TCACTCGGTCTTTTAACAACATATTTAAATAACAAACAGGCAAAATCACAATGTAA 11750 Query 119513 CCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTT 119572 |||||||| |||||||| || || ||| ||| | || ||||| || || | || Sbjct 11751 TCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTTAAACCTGGCATCAGGCCACGCTT 11810 Query 119573 CTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAA 119632 || ||||||||||| || ||| || || || ||||| || || ||||| || || Sbjct 11811 TTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAAAAGATACCTTCAACACATGCAAA 11870 Query 119633 AGCGAATAGACGCTCAGCAAAAG-GTC-GA--GACTTGTCGAACCACTTGAGAGCCCAGT 119688 || | | | || ||||||| | | || || ||| | ||| || | ||||| | Sbjct 11871 GGCAATCAATCTTTCGGCAAAAGAGACTGATGGATTTG-CAGTCCAGTTTATTGCCCATT 11929 Query 119689 TGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAG 119748 ||||| | | | || |||||||||| || |||| |||||| || | | Sbjct 11930 CAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGCTTTGAAAAGAAACTCCCGCTGGT 11989 Query 119749 CACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCAT 119808 || ||| | || || | || || ||| ||| ||||| || || | ||| Sbjct 11990 CAGGATCACTGATGTAAGTGTCTATCAGTAGGCTGTACATCTCAGAGTGCACATTCTCAA 12049 Query 119809 TGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAAT 119868 | ||| | ||||||| | |||||||||| ||| || | || | ||| Sbjct 12050 TCGCAATTTGAAAACCATAAAAACATCGAGCTTCGGTAATCTGGATATCACGAATAAATC 12109 Query 119869 TGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACT 119928 | | | ||||||| ||||| || || || ||| ||||||||| || | || Sbjct 12110 TTTCAGCTAAATTTTCATTTACAATACCGTCTGAGGCAGAGAAGAATGCCAACACATAGC 12169 Query 119929 TTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATCTTTAGACAAGT 119988 | || || | |||| | |||||| || | |||||| | |||| ||| |||| Sbjct 12170 TGATAAAATGACGTTCTTCATCGTTAAGCTTAGCCCAGTCAGTTAAATCTCGAGATAAGT 12229 Query 119989 CCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTTCCCAAAGTTCAG 120048 | ||||||||| | |||||| || | || || ||||| | |||||||| |||| Sbjct 12230 CAACCTCTTCAACAGTCCAGAACGAGGCTTCAGCTTTCTTATACATTTCCCAAATATCAG 12289 Query 120049 GATACT 120054 |||||| Sbjct 12290 GATACT 12295 >seq442 Length=7801961 Score = 96.9 bits (106), Expect = 4e-15 Identities = 215/323 (67%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 109531 CCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTAC 109590 ||||| ||||| ||||| || | ||| ||||| ||||||||| ||||| ||| Sbjct 3251761 CCACGTTCAGCAGCCATTTCCAGAATATTTTTTTGAGGAATTTCCCAAACAGTTCGATAC 3251820 Query 109591 AAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACC 109650 || | ||| ||||| || || || | | || |||||| ||||| | | | Sbjct 3251821 AATTGCTTAATATCCTCTGGGATACCTTCAATAGCTTGAATGGAGCCTCTGTGATAAATA 3251880 Query 109651 ATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGC 109710 || | || |||| |||| ||| || | | | | ||| | |||||||| Sbjct 3251881 ATCTGTTCTCTCATGTCTTCATTCCAAAGTTCTCGATCAGTCAAATCTTTGACAAGATGG 3251940 Query 109711 TTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAG 109770 | ||| || || ||||||||||| ||| ||||| ||||||||| | || || Sbjct 3251941 TGGTTAACTACTTGAAATTCACCAGAAAGAACTCGTCGAGTATAGATGTTACTTGTATAT 3252000 Query 109771 GGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCC 109830 ||||| | | | || ||||| || | || || ||||| || ||||| |||||||| || Sbjct 3252001 GGTTCAATAGATTCGTTGTTCCCCAAAATCTGAGCAGTTGATGCTGTAGGCATGGGCGCT 3252060 Query 109831 ATGAGAAGACTGTTTCGGAGACC 109853 | | ||||||||||| ||||| Sbjct 3252061 AATAACAGACTGTTTCGAAGACC 3252083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971280829800