Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq444 174 3e-38 >seq444 Length=5217058 Score = 174 bits (192), Expect = 3e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| || | |||||| || || |||||||||||||| ||||| ||||| | Sbjct 3541810 AGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGA 3541869 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || |||||||| ||||| |||||||| | ||||||||||| || || || |||||| Sbjct 3541870 CCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCT 3541929 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| ||||| || ||||| ||||| || || ||| ||| || ||||| ||| Sbjct 3541930 TTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTA 3541989 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | ||||| || || | |||||||||||| | ||||||| Sbjct 3541990 ATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCATT 3542028 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || | |||||| || |||||||||||||| ||||||||| || || | Sbjct 3542386 AGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGT 3542445 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| ||||| |||||||| | || ||||| || || || || ||||| Sbjct 3542446 CCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCC 3542505 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || || || || || ||||| |||||||| ||| || |||||||| Sbjct 3542506 TTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTG 3542565 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| || | ||| || ||||| | |||||| Sbjct 3542566 ATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || ||||| ||||| ||||| || | ||| |||| ||||| || ||||| ||||| Sbjct 3541602 AGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCATCCTCAAGCTGTTTACC 3541661 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| || || ||||| || || || || ||||| |||||||| ||||| ||| Sbjct 3541662 AGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCCTT 3541721 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||| || ||||||||||| ||| ||| ||||| | ||| | || || || || | || Sbjct 3541722 GACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATGGTTTTACCAGTGAGGGT 3541781 Query 195123 TTTTACGAACACTTGCAT 195140 ||| ||||| | |||||| Sbjct 3541782 TTTGACGAAAATTTGCAT 3541799 Score = 140 bits (154), Expect = 7e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 ||||||| ||||| ||||| | | || | ||||||||||| || || || ||||||| Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGA 3542245 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | | ||||||||||| || ||||| ||||| ||||| || ||||| ||||||||| | Sbjct 3542246 TCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTT 3542305 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 ||||||| || ||| ||| ||||| | |||| || ||||| || | ||||| |||| Sbjct 3542306 CAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGA 3542365 Query 195131 ACACTTGCAT 195140 | | |||||| Sbjct 3542366 AAATTTGCAT 3542375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109472488035647