Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq444 174 3e-38
>seq444
Length=5217058
Score = 174 bits (192), Expect = 3e-38
Identities = 170/219 (78%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||| ||| || | |||||| || || |||||||||||||| ||||| ||||| |
Sbjct 3541810 AGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGA 3541869
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|| || |||||||| ||||| |||||||| | ||||||||||| || || || ||||||
Sbjct 3541870 CCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCT 3541929
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|||||||| ||||| || ||||| ||||| || || ||| ||| || ||||| |||
Sbjct 3541930 TTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTA 3541989
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
| ||||| || || | |||||||||||| | |||||||
Sbjct 3541990 ATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCATT 3542028
Score = 150 bits (166), Expect = 4e-31
Identities = 164/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||| || || | |||||| || |||||||||||||| ||||||||| || || |
Sbjct 3542386 AGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGT 3542445
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| ||||| ||||| |||||||| | || ||||| || || || || |||||
Sbjct 3542446 CCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCC 3542505
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|||||||| || || || || || ||||| |||||||| ||| || ||||||||
Sbjct 3542506 TTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTG 3542565
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || ||||| || | ||| || ||||| | ||||||
Sbjct 3542566 ATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603
Score = 145 bits (160), Expect = 2e-29
Identities = 151/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002
||| || ||||| ||||| ||||| || | ||| |||| ||||| || ||||| |||||
Sbjct 3541602 AGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCATCCTCAAGCTGTTTACC 3541661
Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062
|||||||| || || ||||| || || || || ||||| |||||||| ||||| |||
Sbjct 3541662 AGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCCTT 3541721
Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122
||| || ||||||||||| ||| ||| ||||| | ||| | || || || || | ||
Sbjct 3541722 GACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGATGGTTTTACCAGTGAGGGT 3541781
Query 195123 TTTTACGAACACTTGCAT 195140
||| ||||| | ||||||
Sbjct 3541782 TTTGACGAAAATTTGCAT 3541799
Score = 140 bits (154), Expect = 7e-28
Identities = 145/190 (76%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010
||||||| ||||| ||||| | | || | ||||||||||| || || || |||||||
Sbjct 3542186 CTTTTTGGATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGA 3542245
Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070
| | ||||||||||| || ||||| ||||| ||||| || ||||| ||||||||| |
Sbjct 3542246 TCAAACGTTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTT 3542305
Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130
||||||| || ||| ||| ||||| | |||| || ||||| || | ||||| ||||
Sbjct 3542306 CAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGA 3542365
Query 195131 ACACTTGCAT 195140
| | ||||||
Sbjct 3542366 AAATTTGCAT 3542375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109472488035647
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |