Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq443 95.1 2e-14 seq462 86.0 8e-12 seq448 86.0 8e-12 >seq443 Length=6836010 Score = 95.1 bits (104), Expect = 2e-14 Identities = 146/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 104915 GAAATTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAG--TTTTTAGATTCTTGTG 104972 |||| || ||| | | ||| ||| |||||| || | ||| |||||||||||| || Sbjct 506103 GAAAAAGGAGTTCATATTTGGGATGCTAATGGATC--GAAAGAATTTTTAGATTCTGTTG 506046 Query 104973 GATT-TCACTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACAT 105031 | || ||| | || ||||||| |||||||| || |||||||| ||||||||| ||||| Sbjct 506045 GTTTCTCA-GATAGAGAAGAAGGAGATTTAGGTCCTATTTATGGGTTTCAATGGCGACAT 505987 Query 105032 GCTGGAGCTCAATATATCGACTGTGATACCGACTATACCGGCCAAGGTATAGACCAATTA 105091 || || ||||||| || |||| | ||| | || |||||||| ||||| || Sbjct 505986 TGGGGTGCCAAATATATTGATGCAAATACAAATTATTCTGGTCAAGGTATTGACCAGTTG 505927 Query 105092 AGTCAAGTTATAGAAACTATAAAA 105115 | | ||||| |||| || ||| Sbjct 505926 AAAAATGTTATTGAAAAAATCAAA 505903 >seq462 Length=1523190 Score = 86.0 bits (94), Expect = 8e-12 Identities = 159/229 (69%), Gaps = 12/229 (5%) Strand=Plus/Minus Query 152417 GGAAGAGTCTAATATAACCATTCAATTTTTGAAAGGAAATCATGGTGATAATTGGCCTTT 152476 ||||||||| | | || || ||||| || || | ||||||||| ||||| Sbjct 1352836 GGAAGAGTCCACATTGAC-ATAAAATTTGTGGTTGGTGAACATGGTGATGGAGATCCTTT 1352778 Query 152477 TGATGGACCCGGACAAATTTTAGCTCATGCATTTTTTCCTGGTTCTGGAAGAGGAGGAGA 152536 ||||| || ||| | | ||||||||||||| ||| || | |||| || || Sbjct 1352777 CGATGGTCCAGGAAATACATTAGCTCATGCATATTTCCCACAATATGGA------GGTGA 1352724 Query 152537 TGTACATTTTGACATTGAAGAAATGTGGACTTTGTGGGATGAGGATATCGGAACCAGTCT 152596 || ||||||||| ||||||| ||||| | ||| | ||| ||||||| ||| Sbjct 1352723 TGCTCATTTTGACGATGAAGAATACTGGACCATT---GATTCGTATACTGGAACCAATCT 1352667 Query 152597 -TTTCAGTGTGGCCATTCATGAATTAGGACATTCTTTAGGTATAGGTCA 152644 ||||| || || |||||||||||||||||||||||| ||||||| Sbjct 1352666 ATTTCAA-GTTGCAGCTCATGAATTAGGACATTCTTTAGGCTTAGGTCA 1352619 >seq448 Length=3678511 Score = 86.0 bits (94), Expect = 8e-12 Identities = 120/165 (73%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 126103 ATTATCCTCAAAAACCACTTGTTACAAC-CGATAT-TGCAGAATTTAATGGTCTAAATGA 126160 ||||||| ||||| ||| | |||||||| |||| | || | ||||| || | | || Sbjct 3090541 ATTATCCCCAAAAGCCATTGGTTACAACTCGATCTATGGAATATTTAC--GTTTCAGAGA 3090598 Query 126161 ATACCCCAATGGTATTAATGCAATTGTAGCAATCGCGTGTTACACTGGATACAATCAAGA 126220 || || |||||| ||| ||||||| || || || |||||| |||||||||||||| Sbjct 3090599 ATTACCAGCTGGTATCAATTCAATTGTTGCCATTATGTCTTACACGGGATACAATCAAGA 3090658 Query 126221 AGATAGTGTTATTCTTAATAAAGCATCTATCGAAAGAGGTTTATT 126265 |||| ||| ||| | ||| | | |||| || ||||||| || Sbjct 3090659 AGATTCTGTCATTTTAAATTCATCTGCTATAGATCGAGGTTTCTT 3090703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658397924544360