Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_015780.1
Length=205791
Score E
Sequences producing significant alignments: (Bits) Value
seq443 95.1 2e-14
seq462 86.0 8e-12
seq448 86.0 8e-12
>seq443
Length=6836010
Score = 95.1 bits (104), Expect = 2e-14
Identities = 146/204 (72%), Gaps = 6/204 (3%)
Strand=Plus/Minus
Query 104915 GAAATTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAG--TTTTTAGATTCTTGTG 104972
|||| || ||| | | ||| ||| |||||| || | ||| |||||||||||| ||
Sbjct 506103 GAAAAAGGAGTTCATATTTGGGATGCTAATGGATC--GAAAGAATTTTTAGATTCTGTTG 506046
Query 104973 GATT-TCACTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACAT 105031
| || ||| | || ||||||| |||||||| || |||||||| ||||||||| |||||
Sbjct 506045 GTTTCTCA-GATAGAGAAGAAGGAGATTTAGGTCCTATTTATGGGTTTCAATGGCGACAT 505987
Query 105032 GCTGGAGCTCAATATATCGACTGTGATACCGACTATACCGGCCAAGGTATAGACCAATTA 105091
|| || ||||||| || |||| | ||| | || |||||||| ||||| ||
Sbjct 505986 TGGGGTGCCAAATATATTGATGCAAATACAAATTATTCTGGTCAAGGTATTGACCAGTTG 505927
Query 105092 AGTCAAGTTATAGAAACTATAAAA 105115
| | ||||| |||| || |||
Sbjct 505926 AAAAATGTTATTGAAAAAATCAAA 505903
>seq462
Length=1523190
Score = 86.0 bits (94), Expect = 8e-12
Identities = 159/229 (69%), Gaps = 12/229 (5%)
Strand=Plus/Minus
Query 152417 GGAAGAGTCTAATATAACCATTCAATTTTTGAAAGGAAATCATGGTGATAATTGGCCTTT 152476
||||||||| | | || || ||||| || || | ||||||||| |||||
Sbjct 1352836 GGAAGAGTCCACATTGAC-ATAAAATTTGTGGTTGGTGAACATGGTGATGGAGATCCTTT 1352778
Query 152477 TGATGGACCCGGACAAATTTTAGCTCATGCATTTTTTCCTGGTTCTGGAAGAGGAGGAGA 152536
||||| || ||| | | ||||||||||||| ||| || | |||| || ||
Sbjct 1352777 CGATGGTCCAGGAAATACATTAGCTCATGCATATTTCCCACAATATGGA------GGTGA 1352724
Query 152537 TGTACATTTTGACATTGAAGAAATGTGGACTTTGTGGGATGAGGATATCGGAACCAGTCT 152596
|| ||||||||| ||||||| ||||| | ||| | ||| ||||||| |||
Sbjct 1352723 TGCTCATTTTGACGATGAAGAATACTGGACCATT---GATTCGTATACTGGAACCAATCT 1352667
Query 152597 -TTTCAGTGTGGCCATTCATGAATTAGGACATTCTTTAGGTATAGGTCA 152644
||||| || || |||||||||||||||||||||||| |||||||
Sbjct 1352666 ATTTCAA-GTTGCAGCTCATGAATTAGGACATTCTTTAGGCTTAGGTCA 1352619
>seq448
Length=3678511
Score = 86.0 bits (94), Expect = 8e-12
Identities = 120/165 (73%), Gaps = 4/165 (2%)
Strand=Plus/Plus
Query 126103 ATTATCCTCAAAAACCACTTGTTACAAC-CGATAT-TGCAGAATTTAATGGTCTAAATGA 126160
||||||| ||||| ||| | |||||||| |||| | || | ||||| || | | ||
Sbjct 3090541 ATTATCCCCAAAAGCCATTGGTTACAACTCGATCTATGGAATATTTAC--GTTTCAGAGA 3090598
Query 126161 ATACCCCAATGGTATTAATGCAATTGTAGCAATCGCGTGTTACACTGGATACAATCAAGA 126220
|| || |||||| ||| ||||||| || || || |||||| ||||||||||||||
Sbjct 3090599 ATTACCAGCTGGTATCAATTCAATTGTTGCCATTATGTCTTACACGGGATACAATCAAGA 3090658
Query 126221 AGATAGTGTTATTCTTAATAAAGCATCTATCGAAAGAGGTTTATT 126265
|||| ||| ||| | ||| | | |||| || ||||||| ||
Sbjct 3090659 AGATTCTGTCATTTTAAATTCATCTGCTATAGATCGAGGTTTCTT 3090703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658397924544360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |