Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq468 260 2e-64
seq453 260 2e-64
seq444 96.9 4e-15
>seq468
Length=1118636
Score = 260 bits (288), Expect = 2e-64
Identities = 490/712 (69%), Gaps = 14/712 (2%)
Strand=Plus/Plus
Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTT 37051
|||||| ||| | || || |||||||| || ||||||| ||| | || | |||
Sbjct 1106095 TAATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTT 1106154
Query 37052 TATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGC 37111
|| || || || ||||| | ||| || | |||| | || ||| |||||
Sbjct 1106155 CATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGC 1106214
Query 37112 ATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAA----ATATTTAA 37167
|||| ||||| | ||||| || |||| | || | |||||| ||||||||
Sbjct 1106215 ATCTCGCACTATTTCTTGAATAATTTTTTCACTCGG----TCTTTTAACAACATATTTAA 1106270
Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227
| || ||||| ||||||||||||||||| |||||||||| | || | ||| ||||| |
Sbjct 1106271 ATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGA 1106330
Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAG 37287
| ||||| |||||||| | || | ||||||| |||||| || || || ||||| || |
Sbjct 1106331 AAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTG 1106390
Query 37288 AAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTAT 37347
| || || ||||||||||| |||||| || | | | | | |||| || ||
Sbjct 1106391 AGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAG-AGACTGAT 1106449
Query 37348 -AATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406
|| | | |||| ||| ||| ||| || |||||| ||||||| | ||||||
Sbjct 1106450 GGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCA 1106509
Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466
|| ||||| || ||||| | | ||| ||| | || ||||| || || ||||
Sbjct 1106510 ATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGG 1106569
Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526
|| ||||| |||||||| | ||| ||||| || || ||||||||||||||||| | ||||
Sbjct 1106570 CTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCT 1106629
Query 37527 TCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585
|| | |||| || | ||| || ||| || | |||||| |||||||| || || || ||
Sbjct 1106630 TC-GGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTC 1106688
Query 37586 ACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAA-TT 37644
|| | ||||| || | ||||| | |||||||| | ||| ||| | | ||| |
Sbjct 1106689 TGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCA-TCGTTAAGCT 1106747
Query 37645 TTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696
| ||| ||| | | |||| ||||| ||||| || ||||| ||||| ||
Sbjct 1106748 TAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAA 1106799
>seq453
Length=2394413
Score = 260 bits (288), Expect = 2e-64
Identities = 490/712 (69%), Gaps = 14/712 (2%)
Strand=Plus/Plus
Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTT 37051
|||||| ||| | || || |||||||| || ||||||| ||| | || | |||
Sbjct 11547 TAATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTT 11606
Query 37052 TATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGC 37111
|| || || || ||||| | ||| || | |||| | || ||| |||||
Sbjct 11607 CATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGC 11666
Query 37112 ATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAA----ATATTTAA 37167
|||| ||||| | ||||| || |||| | || | |||||| ||||||||
Sbjct 11667 ATCTCGCACTATTTCTTGAATAATTTTTTCACTCGG----TCTTTTAACAACATATTTAA 11722
Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227
| || ||||| ||||||||||||||||| |||||||||| | || | ||| ||||| |
Sbjct 11723 ATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGA 11782
Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAG 37287
| ||||| |||||||| | || | ||||||| |||||| || || || ||||| || |
Sbjct 11783 AAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTG 11842
Query 37288 AAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTAT 37347
| || || ||||||||||| |||||| || | | | | | |||| || ||
Sbjct 11843 AGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAG-AGACTGAT 11901
Query 37348 -AATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406
|| | | |||| ||| ||| ||| || |||||| ||||||| | ||||||
Sbjct 11902 GGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCA 11961
Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466
|| ||||| || ||||| | | ||| ||| | || ||||| || || ||||
Sbjct 11962 ATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGG 12021
Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526
|| ||||| |||||||| | ||| ||||| || || ||||||||||||||||| | ||||
Sbjct 12022 CTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCT 12081
Query 37527 TCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585
|| | |||| || | ||| || ||| || | |||||| |||||||| || || || ||
Sbjct 12082 TC-GGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTC 12140
Query 37586 ACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAA-TT 37644
|| | ||||| || | ||||| | |||||||| | ||| ||| | | ||| |
Sbjct 12141 TGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCA-TCGTTAAGCT 12199
Query 37645 TTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696
| ||| ||| | | |||| ||||| ||||| || ||||| ||||| ||
Sbjct 12200 TAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAA 12251
>seq444
Length=5217058
Score = 96.9 bits (106), Expect = 4e-15
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 34822 TTTTTCAAAAATTATCTGCGCAACTCTTTCACCCTTTGAAATATAAAATGTTGATTCTCC 34881
||||||| |||||| ||| |||| ||| || || ||| || | || ||| |||||
Sbjct 5155818 TTTTTCACAAATTAGCTGAGCAATTCTATCTCCTTTTTTAACTTGGAAATCTGAATCTCC 5155759
Query 34882 ATTATTAATTACGATAATACCAATATTACCTCTGTAATCCCTATCTATAACACCTCCACC 34941
||| | | ||||| |||| ||||||||||||||| || ||||||||| | ||
Sbjct 5155758 GAAATTGAACAAGATAACTCCAACATTACCTCTGTAATCAGCGTCAATAACACCTGCTCC 5155699
Query 34942 TATATCAATGTATTTATTCAAAGACAAACCTGATCTTGCAGCTATCCTACCATAACATCC 35001
| |||||| | | || | || || || |||| || ||| || ||||||||||| ||
Sbjct 5155698 AACATCAATCGAATGTTTAAGAGCTAATCCAGATCGTGGAGCAATTCTACCATAACAACC 5155639
Query 35002 TTCTGG 35007
|||||
Sbjct 5155638 ATCTGG 5155633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592312054061640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |