Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq468 260 2e-64 seq453 260 2e-64 seq444 96.9 4e-15 >seq468 Length=1118636 Score = 260 bits (288), Expect = 2e-64 Identities = 490/712 (69%), Gaps = 14/712 (2%) Strand=Plus/Plus Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTT 37051 |||||| ||| | || || |||||||| || ||||||| ||| | || | ||| Sbjct 1106095 TAATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTT 1106154 Query 37052 TATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGC 37111 || || || || ||||| | ||| || | |||| | || ||| ||||| Sbjct 1106155 CATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGC 1106214 Query 37112 ATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAA----ATATTTAA 37167 |||| ||||| | ||||| || |||| | || | |||||| |||||||| Sbjct 1106215 ATCTCGCACTATTTCTTGAATAATTTTTTCACTCGG----TCTTTTAACAACATATTTAA 1106270 Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227 | || ||||| ||||||||||||||||| |||||||||| | || | ||| ||||| | Sbjct 1106271 ATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGA 1106330 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAG 37287 | ||||| |||||||| | || | ||||||| |||||| || || || ||||| || | Sbjct 1106331 AAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTG 1106390 Query 37288 AAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTAT 37347 | || || ||||||||||| |||||| || | | | | | |||| || || Sbjct 1106391 AGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAG-AGACTGAT 1106449 Query 37348 -AATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 || | | |||| ||| ||| ||| || |||||| ||||||| | |||||| Sbjct 1106450 GGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCA 1106509 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 || ||||| || ||||| | | ||| ||| | || ||||| || || |||| Sbjct 1106510 ATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGG 1106569 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 || ||||| |||||||| | ||| ||||| || || ||||||||||||||||| | |||| Sbjct 1106570 CTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCT 1106629 Query 37527 TCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585 || | |||| || | ||| || ||| || | |||||| |||||||| || || || || Sbjct 1106630 TC-GGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTC 1106688 Query 37586 ACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAA-TT 37644 || | ||||| || | ||||| | |||||||| | ||| ||| | | ||| | Sbjct 1106689 TGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCA-TCGTTAAGCT 1106747 Query 37645 TTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | ||| ||| | | |||| ||||| ||||| || ||||| ||||| || Sbjct 1106748 TAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAA 1106799 >seq453 Length=2394413 Score = 260 bits (288), Expect = 2e-64 Identities = 490/712 (69%), Gaps = 14/712 (2%) Strand=Plus/Plus Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTT 37051 |||||| ||| | || || |||||||| || ||||||| ||| | || | ||| Sbjct 11547 TAATTCAACCAGCAATCTGTCTGCAACAAACTCAATGTATTGGGCCATCATTTTGTTGTT 11606 Query 37052 TATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGC 37111 || || || || ||||| | ||| || | |||| | || ||| ||||| Sbjct 11607 CATTCCTATGAGAGAAACTGGCAATGCCTCGGTTAAAAATTTCTGCTCGATTTCCACAGC 11666 Query 37112 ATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAA----ATATTTAA 37167 |||| ||||| | ||||| || |||| | || | |||||| |||||||| Sbjct 11667 ATCTCGCACTATTTCTTGAATAATTTTTTCACTCGG----TCTTTTAACAACATATTTAA 11722 Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227 | || ||||| ||||||||||||||||| |||||||||| | || | ||| ||||| | Sbjct 11723 ATAACAAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGA 11782 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAG 37287 | ||||| |||||||| | || | ||||||| |||||| || || || ||||| || | Sbjct 11783 AAGTTAAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTG 11842 Query 37288 AAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTAT 37347 | || || ||||||||||| |||||| || | | | | | |||| || || Sbjct 11843 AGAAAAAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAAAG-AGACTGAT 11901 Query 37348 -AATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 || | | |||| ||| ||| ||| || |||||| ||||||| | |||||| Sbjct 11902 GGATTTGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCA 11961 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 || ||||| || ||||| | | ||| ||| | || ||||| || || |||| Sbjct 11962 ATAGCTTTGAAAAGAAACTCCCGCTGGTCAGGATCACTGATGTAAGTGTCTATCAGTAGG 12021 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 || ||||| |||||||| | ||| ||||| || || ||||||||||||||||| | |||| Sbjct 12022 CTGTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCT 12081 Query 37527 TCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585 || | |||| || | ||| || ||| || | |||||| |||||||| || || || || Sbjct 12082 TC-GGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTC 12140 Query 37586 ACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAA-TT 37644 || | ||||| || | ||||| | |||||||| | ||| ||| | | ||| | Sbjct 12141 TGAGGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCA-TCGTTAAGCT 12199 Query 37645 TTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | ||| ||| | | |||| ||||| ||||| || ||||| ||||| || Sbjct 12200 TAGCCCAGTCAGTTAAATCTCGAGATAAGTCAACCTCTTCAACAGTCCAGAA 12251 >seq444 Length=5217058 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 34822 TTTTTCAAAAATTATCTGCGCAACTCTTTCACCCTTTGAAATATAAAATGTTGATTCTCC 34881 ||||||| |||||| ||| |||| ||| || || ||| || | || ||| ||||| Sbjct 5155818 TTTTTCACAAATTAGCTGAGCAATTCTATCTCCTTTTTTAACTTGGAAATCTGAATCTCC 5155759 Query 34882 ATTATTAATTACGATAATACCAATATTACCTCTGTAATCCCTATCTATAACACCTCCACC 34941 ||| | | ||||| |||| ||||||||||||||| || ||||||||| | || Sbjct 5155758 GAAATTGAACAAGATAACTCCAACATTACCTCTGTAATCAGCGTCAATAACACCTGCTCC 5155699 Query 34942 TATATCAATGTATTTATTCAAAGACAAACCTGATCTTGCAGCTATCCTACCATAACATCC 35001 | |||||| | | || | || || || |||| || ||| || ||||||||||| || Sbjct 5155698 AACATCAATCGAATGTTTAAGAGCTAATCCAGATCGTGGAGCAATTCTACCATAACAACC 5155639 Query 35002 TTCTGG 35007 ||||| Sbjct 5155638 ATCTGG 5155633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592312054061640