Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq444 113 1e-20 >seq444 Length=5217058 Score = 113 bits (124), Expect = 1e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 960 CCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATT 1019 ||| |||| |||||||||||||| ||||| | || |||||||| ||| | |||| Sbjct 5155633 CCAGATGGTTGTTATGGTAGAATTGCTCCACGATCTGGATTAGCTCTTAAACATTCGATT 5155692 Query 1020 GATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTT 1079 ||||| || || ||||||||||| | || | || || || ||||| ||| | || || Sbjct 5155693 GATGTTGGAGCAGGTGTTATTGACGCTGATTACAGAGGTAATGTTGGAGTTATCTTGTTC 5155752 Query 1080 AATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGT 1139 ||||| | ||| ||| || || || ||| ||||| ||||||||| |||||||| Sbjct 5155753 AATTTCGGAGATTCAGATTTCCAAGTTAAAAAAGGAGATAGAATTGCTCAGCTAATTTGT 5155812 Query 1140 GAAAA 1144 ||||| Sbjct 5155813 GAAAA 5155817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138680544372996