Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq444 87.8 1e-12 >seq444 Length=5217058 Score = 87.8 bits (96), Expect = 1e-12 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 9076 ATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTG--TGT 9133 |||| ||||||||||| |||||||| || || || || || || || |||| | | Sbjct 5155820 ATTTTTTCACAAATTAGCTGAGCAATTCTATCTCCTTTTTTAACTTGGAAATCTGAATCT 5155761 Query 9134 CGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAG 9193 | ||| |||||||| | ||||| || ||||| |||||||| | || || ||||| | Sbjct 5155760 CCGAA--ATTGAACAAGATAACTCCAACATTACCTCTGTAATCAGCGTCAATAACACCTG 5155703 Query 9194 CACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGC 9253 | || || || || | || || | |||| |||||| || || || |||| ||| || | Sbjct 5155702 CTCCAACATCAATCGAATGTTTAAGAGCTAATCCAGATCGTGGAGCAATTCTACCATAAC 5155643 Query 9254 ATCC 9257 | || Sbjct 5155642 AACC 5155639 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || |||||||||||||| |||||| ||| | ||| Sbjct 3541810 AGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGA 3541869 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||| ||||| || || |||| || ||||| || | || | || || Sbjct 3541870 CCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCT 3541929 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || ||| || | | || || || | || ||||| | ||| Sbjct 3541930 TTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTA 3541989 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||||||| ||||| ||||| Sbjct 3541990 ATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || ||||| || || || |||||||||||| |||||||| || | || Sbjct 3542386 AGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGT 3542445 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| ||||| || || |||| ||||||||||| | || | || ||| Sbjct 3542446 CCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCC 3542505 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| ||| | | || || || | || ||||| | || Sbjct 3542506 TTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTG 3542565 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | ||| || || ||||| ||||| Sbjct 3542566 ATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934624044043