Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq444 87.8 1e-12
>seq444
Length=5217058
Score = 87.8 bits (96), Expect = 1e-12
Identities = 131/184 (71%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 9076 ATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTG--TGT 9133
|||| ||||||||||| |||||||| || || || || || || || |||| | |
Sbjct 5155820 ATTTTTTCACAAATTAGCTGAGCAATTCTATCTCCTTTTTTAACTTGGAAATCTGAATCT 5155761
Query 9134 CGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAG 9193
| ||| |||||||| | ||||| || ||||| |||||||| | || || ||||| |
Sbjct 5155760 CCGAA--ATTGAACAAGATAACTCCAACATTACCTCTGTAATCAGCGTCAATAACACCTG 5155703
Query 9194 CACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGC 9253
| || || || || | || || | |||| |||||| || || || |||| ||| || |
Sbjct 5155702 CTCCAACATCAATCGAATGTTTAAGAGCTAATCCAGATCGTGGAGCAATTCTACCATAAC 5155643
Query 9254 ATCC 9257
| ||
Sbjct 5155642 AACC 5155639
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| ||||| || || || |||||||||||||| |||||| ||| | |||
Sbjct 3541810 AGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCACTGAGAGTACGA 3541869
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | ||| ||||| || || |||| || ||||| || | || | || ||
Sbjct 3541870 CCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGGATACCTTCT 3541929
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| || || ||| || | | || || || | || ||||| | |||
Sbjct 3541930 TTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCAACCTCAAGTGTA 3541989
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || | ||||||||| ||||| |||||
Sbjct 3541990 ATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCAT 3542027
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || || ||||| || || || |||||||||||| |||||||| || | ||
Sbjct 3542386 AGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCGCTCAGGGTACGT 3542445
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | ||| ||||| || || |||| ||||||||||| | || | || |||
Sbjct 3542446 CCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGTGGGATACCTTCC 3542505
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| ||| ||| | | || || || | || ||||| | ||
Sbjct 3542506 TTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCAACCTCAAGGGTG 3542565
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||||||| || | ||| || || ||||| |||||
Sbjct 3542566 ATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380934624044043
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |