Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq442 156 2e-33 >seq442 Length=7801961 Score = 156 bits (172), Expect = 2e-33 Identities = 299/435 (69%), Gaps = 7/435 (2%) Strand=Plus/Plus Query 25924 AACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCAT 25983 |||| ||||||||| | || || | ||| | || |||| ||||||| |||||||| Sbjct 3252831 AACTCGCTCCATAAAAAGATTAGGCACCCAAAGAGCTAAAAACAAATCTCGAGCTCTCAT 3252890 Query 25984 TTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATG 26042 |||||||| || ||| || || || || || ||||||||| | ||| | ||||| | Sbjct 3252891 CTCTTCTTTACCAGTGTTTTTTCTTAAGCA-TAGGAAATCAAAGACATCAGCATGCCAAG 3252949 Query 26043 GTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTG 26102 | || | ||| |||||| || ||| || ||| || || ||| | || || | | Sbjct 3252950 GCTCAATATAAATAGCATAAGCTCCTGGTCGTTTACCCCC---TTGGTTGACATAACGAG 3253006 Query 26103 CAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGC-TA 26161 ||| |||||| || | ||||| ||| || || | ||| || || || ||||| | | Sbjct 3253007 CAGATTCATTAAACATTTTCAGCATAGGCACGAGACCATCAGAGAAACCATTTGTCCCTC 3253066 Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCAT 26221 ||| || || |||| ||| || |||| ||| ||| | ||| ||||||||||| || Sbjct 3253067 TGATTCG-GGTTCCTTTCGCTCGAATACAATGAACATTGAGACCAATTCCACCAGCATAT 3253125 Query 26222 TTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTC 26281 || ||||| ||||||| | |||||| | ||||||| || ||||| | || Sbjct 3253126 TTAGAAATCAAATTACAATCTTTCAAAGTATCGGATATTCCTTCAATACTATCTTCCCTC 3253185 Query 26282 ATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTC 26341 ||| ||| | ||||||| ||||| || | ||| ||| || | |||||| | || Sbjct 3253186 ATTGATAAAAGAAAACAACTAGATAGCTGAGGTCGAGGTGTACCAGCATTAAAAAGGGTA 3253245 Query 26342 GGTGTAGCATGAGTA 26356 || | |||||| ||| Sbjct 3253246 GGAGAAGCATGTGTA 3253260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038023204075