Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq450 273 3e-68
>seq450
Length=3639652
Score = 273 bits (302), Expect = 3e-68
Identities = 543/792 (69%), Gaps = 18/792 (2%)
Strand=Plus/Minus
Query 47602 GCCTTAGAGGCATCACCTAATAAGGTCTCTACTTCAGCAGGACGGAAATATTTAG-AGTC 47660
|| || || ||||| ||||| | | | || ||||| ||||||||||||||||| | | ||
Sbjct 786000 GCTTTTGAAGCATCGCCTAAAAGGATTTCAACTTCGGCAGGACGGAAATATTTTGCATTC 785941
Query 47661 AATTCTGAT--AACCGTTTTACCATCAGAATCAATACCAACTTCATCAAGACCAGAACCT 47718
| || | ||| || | || || |||| || ||||| | || |||
Sbjct 785940 ACTTTAACTCGAACGATTCCAGTTTCTTTTTCTTTACCCACCTCATCTAATCCTTTTCCT 785881
Query 47719 TCCCATCTAATATTCATATCAAAATAAGGTGCA-GATTCCTCAACAAACTGACGGACAGA 47777
|||||| ||| || | | | || || | | ||| |||||||||| || |||
Sbjct 785880 TCCCATTCAATGTTTTTGCCGACATGTT-TGAATGCTTCTTCAACAAACTCGCGAACACT 785822
Query 47778 ATATTGA---TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAA 47834
|||| ||||| ||||| || || ||||| ||||| | ||||| |||||||| |
Sbjct 785821 ---TTGAGCTTTTCCAGTGGCTATCACGAAATCTTCAGGCTTGTCTTGCTGAAGCATGAG 785765
Query 47835 CCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCC 47894
||||||||| || ||||||||| | ||||| |||||||| | || || | || ||
Sbjct 785764 CCACATAGCTTCAACATAATCTTTCGCATGACCCCAGTCTCTTTTGGCGTCTAAGTTACC 785705
Query 47895 TAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTTAATG--CTCTTGTAATCTTA 47952
||| | | | |||| || ||| ||| || ||| | |||| ||||| |||
Sbjct 785704 TAGTTCGATATAGTCCAACTCACCGATAGAAAT--CTTGGCAACACCTCTAGTAATTTTA 785647
Query 47953 CGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAG 48012
|| || |||||||||||||| | ||| || |||||||||||| | ||||||| |
Sbjct 785646 CGGGTAACAAAAGTTTCACCTCTTCTAGGGCTTTCATGATTAAATAAAATACCATTGACT 785587
Query 48013 GCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCA 48072
||| |||| ||||| |||||||||||| ||||||||||| ||||| | ||| |||
Sbjct 785586 GCAAACATGTTGTATGCTTCACGATAGTTGACAACTATCCAGTAACCATACAATTTAGCA 785527
Query 48073 ACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACC 48132
||||| ||||| || | ||||||||||||||| | || | ||||| | ||||| ||
Sbjct 785526 ACACCGTAAGGCGATCTTGGATAGAAAGGTGTTTTTTCATTTTGTGGTATTTCTTGGACT 785467
Query 48133 TTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCC-ATCTCAAG 48191
||||||||||||||||| || ||||||||||| | ||| | | || ||| ||
Sbjct 785466 TTACCATAAAGTTCACTAGTTGATGCTTGATAAAATTTAACTTTGGTTCCCAATCCACAG 785407
Query 48192 CAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTC 48251
| | || || || | ||||| | || || || |||||| | ||||||| ||
Sbjct 785406 C-TTCTGATAGCATCTAATACTCTTAAAGTTCCAATTGCATCTACATTTGCAGTATATTC 785348
Query 48252 GGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGG 48311
|| ||| || ||||| || ||||| || || || | | ||| || || ||||| ||
Sbjct 785347 ACTCAGCTCGAATGAAACTTTGACATGGCTTTGAGCTGCTAAATTGTATATTTCATCAGG 785288
Query 48312 TTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAA 48371
| | || | ||| | | || | | |||| || || | || |||||||||||
Sbjct 785287 CTTTATCTCATTAATTATTTTGACCAGACAAGTAGTATCCGTCATATCCCCATAATGCAA 785228
Query 48372 TTTTAATTGATC 48383
||| |||||||
Sbjct 785227 -TTTCATTGATC 785217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665489067726120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |