Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq450 273 3e-68 >seq450 Length=3639652 Score = 273 bits (302), Expect = 3e-68 Identities = 543/792 (69%), Gaps = 18/792 (2%) Strand=Plus/Minus Query 47602 GCCTTAGAGGCATCACCTAATAAGGTCTCTACTTCAGCAGGACGGAAATATTTAG-AGTC 47660 || || || ||||| ||||| | | | || ||||| ||||||||||||||||| | | || Sbjct 786000 GCTTTTGAAGCATCGCCTAAAAGGATTTCAACTTCGGCAGGACGGAAATATTTTGCATTC 785941 Query 47661 AATTCTGAT--AACCGTTTTACCATCAGAATCAATACCAACTTCATCAAGACCAGAACCT 47718 | || | ||| || | || || |||| || ||||| | || ||| Sbjct 785940 ACTTTAACTCGAACGATTCCAGTTTCTTTTTCTTTACCCACCTCATCTAATCCTTTTCCT 785881 Query 47719 TCCCATCTAATATTCATATCAAAATAAGGTGCA-GATTCCTCAACAAACTGACGGACAGA 47777 |||||| ||| || | | | || || | | ||| |||||||||| || ||| Sbjct 785880 TCCCATTCAATGTTTTTGCCGACATGTT-TGAATGCTTCTTCAACAAACTCGCGAACACT 785822 Query 47778 ATATTGA---TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAA 47834 |||| ||||| ||||| || || ||||| ||||| | ||||| |||||||| | Sbjct 785821 ---TTGAGCTTTTCCAGTGGCTATCACGAAATCTTCAGGCTTGTCTTGCTGAAGCATGAG 785765 Query 47835 CCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCC 47894 ||||||||| || ||||||||| | ||||| |||||||| | || || | || || Sbjct 785764 CCACATAGCTTCAACATAATCTTTCGCATGACCCCAGTCTCTTTTGGCGTCTAAGTTACC 785705 Query 47895 TAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTTAATG--CTCTTGTAATCTTA 47952 ||| | | | |||| || ||| ||| || ||| | |||| ||||| ||| Sbjct 785704 TAGTTCGATATAGTCCAACTCACCGATAGAAAT--CTTGGCAACACCTCTAGTAATTTTA 785647 Query 47953 CGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAG 48012 || || |||||||||||||| | ||| || |||||||||||| | ||||||| | Sbjct 785646 CGGGTAACAAAAGTTTCACCTCTTCTAGGGCTTTCATGATTAAATAAAATACCATTGACT 785587 Query 48013 GCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCA 48072 ||| |||| ||||| |||||||||||| ||||||||||| ||||| | ||| ||| Sbjct 785586 GCAAACATGTTGTATGCTTCACGATAGTTGACAACTATCCAGTAACCATACAATTTAGCA 785527 Query 48073 ACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACC 48132 ||||| ||||| || | ||||||||||||||| | || | ||||| | ||||| || Sbjct 785526 ACACCGTAAGGCGATCTTGGATAGAAAGGTGTTTTTTCATTTTGTGGTATTTCTTGGACT 785467 Query 48133 TTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCC-ATCTCAAG 48191 ||||||||||||||||| || ||||||||||| | ||| | | || ||| || Sbjct 785466 TTACCATAAAGTTCACTAGTTGATGCTTGATAAAATTTAACTTTGGTTCCCAATCCACAG 785407 Query 48192 CAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTC 48251 | | || || || | ||||| | || || || |||||| | ||||||| || Sbjct 785406 C-TTCTGATAGCATCTAATACTCTTAAAGTTCCAATTGCATCTACATTTGCAGTATATTC 785348 Query 48252 GGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGG 48311 || ||| || ||||| || ||||| || || || | | ||| || || ||||| || Sbjct 785347 ACTCAGCTCGAATGAAACTTTGACATGGCTTTGAGCTGCTAAATTGTATATTTCATCAGG 785288 Query 48312 TTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAA 48371 | | || | ||| | | || | | |||| || || | || ||||||||||| Sbjct 785287 CTTTATCTCATTAATTATTTTGACCAGACAAGTAGTATCCGTCATATCCCCATAATGCAA 785228 Query 48372 TTTTAATTGATC 48383 ||| ||||||| Sbjct 785227 -TTTCATTGATC 785217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665489067726120