Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq450 116 4e-21 >seq450 Length=3639652 Score = 116 bits (128), Expect = 4e-21 Identities = 241/359 (67%), Gaps = 0/359 (0%) Strand=Plus/Minus Query 177607 TCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGA 177666 || |||| || ||||| ||||||||||||||||| ||||||||||| || || |||||| Sbjct 785793 TCTTCAGGCTTGTCTTGCTGAAGCATGAGCCACATAGCTTCAACATAATCTTTCGCATGA 785734 Query 177667 CCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACA 177726 ||||||||||| |||| | |||||| ||||| | | || |||||| | | Sbjct 785733 CCCCAGTCTCTTTTGGCGTCTAAGTTACCTAGTTCGATATAGTCCAACTCACCGATAGAA 785674 Query 177727 ATTTGTTTGACGCCATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGAT 177786 || | || || |||||| || || ||||| |||||| ||| || | Sbjct 785673 ATCTTGGCAACACCTCTAGTAATTTTACGGGTAACAAAAGTTTCACCTCTTCTAGGGCTT 785614 Query 177787 TCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTG 177846 || || || || | || || | ||| |||| || | ||| || || || Sbjct 785613 TCATGATTAAATAAAATACCATTGACTGCAAACATGTTGTATGCTTCACGATAGTTGACA 785554 Query 177847 ACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTC 177906 || | ||||| | | |||||| | || || || |||| ||| ||||| ||||| Sbjct 785553 ACTATCCAGTAACCATACAATTTAGCAACACCGTAAGGCGATCTTGGATAGAAAGGTGTT 785494 Query 177907 TCCTCAGTTTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 | ||| ||||||| ||||| ||||||||||| | | || |||||| ||||| || Sbjct 785493 TTTTCATTTTGTGGTATTTCTTGGACTTTACCATAAAGTTCACTAGTTGATGCTTGATA 785435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564819986080