Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq444 123 4e-23 seq453 93.3 8e-14 >seq444 Length=5217058 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | ||| | ||| | ||| || || | ||||| ||| || ||||| || Sbjct 3541572 ACCACCACGAAGTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGA 3541631 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | |||| | ||| || | ||||| || || || || | | |||||||||||| || Sbjct 3541632 AAGGGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGG 3541691 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| || ||||| ||||| | || | |||| ||| || ||||||| ||||| Sbjct 3541692 GATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAAC 3541751 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| | || || |||||||| || || ||||| || || |||||||| Sbjct 3541752 TTCCAAGGTGATGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799 >seq453 Length=2394413 Score = 93.3 bits (102), Expect = 8e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 38312 GGATCACAACCGTCaaaaaaaTATTTATCGTTTAAATATATAGCTTTATCTATGGCTTCT 38371 ||||| | ||| || || | |||| || |||||||| ||||| | || | |||||| Sbjct 2274674 GGATCGCGACCATCTAATTCAAATTTGTCATTTAAATAGATAGCGATTTCCAGTGCTTCT 2274733 Query 38372 TGAGGTGTTTTTGTCCATTCTATTAATTTTTTAGCCCAAAACATTCTCATGTAACCATTA 38431 | || | ||| ||||||||| || |||||||||||| |||||||||||||||||| | Sbjct 2274734 TCCGGAGATTTACTCCATTCTAGTATCTTTTTAGCCCAATACATTCTCATGTAACCATGA 2274793 Query 38432 A 38432 | Sbjct 2274794 A 2274794 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 38312 GGATCACAACCGTCaaaaaaaTATTTATCGTTTAAATATATAGCTTTATCTATGGCTTCT 38371 ||||| ||||| || || | |||| | |||||||| ||||| | || | |||||| Sbjct 2285471 GGATCGCAACCATCTAATTCAAATTTGTTATTTAAATAGATAGCGATTTCCAGTGCTTCT 2285530 Query 38372 TGAGGTGTTTTTGTCCATTCTATTAATTTTTTAGCCCAAAACATTCTCATGTAACCATTA 38431 | || | || ||||||||| || |||||||||||| ||||||||||||| |||| | Sbjct 2285531 TCCGGAGATTCACTCCATTCTAGTATCTTTTTAGCCCAATACATTCTCATGTAGCCATGA 2285590 Query 38432 A 38432 | Sbjct 2285591 A 2285591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899647191519120