Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20] 641 sequences; 90,828,597 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq444 150 4e-31 seq468 138 2e-27 seq453 138 2e-27 >seq444 Length=5217058 Score = 150 bits (166), Expect = 4e-31 Identities = 203/277 (73%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 192265 ATGATA-AATTAATAGATATAGAGTATACTTTTTAGTTTAATAAT----ACCACCTCTAA 192319 |||||| |||||| ||| || |||| ||||| | ||| ||| |||||| | || Sbjct 3541526 ATGATACAATTAA-AGAAATTT-GTAT-CTTTTAATTTTCTTAAAGTTGACCACCACGAA 3541582 Query 192320 GACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTT 192379 | |||||||||||||||||||| | ||||| || || || ||||| | ||||| Sbjct 3541583 GTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGAC 3541642 Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | ||||||||||| ||||| | | ||||||||||||||| |||||||| | Sbjct 3541643 CATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCT 3541702 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | ||||| |||||| || ||||| || | || || | ||| ||||| | || | Sbjct 3541703 TGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGA 3541762 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||||||| | ||||| | || || ||||| Sbjct 3541763 TGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799 Score = 127 bits (140), Expect = 4e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||||||||||||||||||||| ||| |||| || | |||||| ||||| ||||| || | Sbjct 3542193 GATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAAACG 3542252 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||| || || || || ||||| || || || |||||| || || || || | Sbjct 3542253 TTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGT 3542312 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || | ||| ||||| | |||||||||||| ||||| | ||||||| || || || Sbjct 3542313 ATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGAAAATTTG 3542372 Query 192534 CAT 192536 ||| Sbjct 3542373 CAT 3542375 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || || || || || | |||| ||||| |||||||||||| Sbjct 3541798 ATACCACCACGAAGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCA 3541857 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | || || | ||||||||||| ||||| || | ||||| |||||| Sbjct 3541858 CTGAGAGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGT 3541917 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| ||||| ||| || || |||| ||| || | ||| Sbjct 3541918 GGGATACCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCA 3541977 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || |||||||| |||||||| | ||||| | || || |||||| Sbjct 3541978 ACCTCAAGTGTAATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCATT 3542028 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| ||||| || || || | |||| |||||| || || ||||| Sbjct 3542374 ATACCACCACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCG 3542433 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||| |||| || | ||||||||||| ||||| || | ||||||||| ||| Sbjct 3542434 CTCAGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGT 3542493 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || ||| ||||| |||| || || | ||| Sbjct 3542494 GGGATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCA 3542553 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || |||||||| ||||| | || || | || || ||||| Sbjct 3542554 ACCTCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603 >seq468 Length=1118636 Score = 138 bits (152), Expect = 2e-27 Identities = 394/606 (65%), Gaps = 14/606 (2%) Strand=Plus/Plus Query 49821 AAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880 ||||| ||||||||| |||||| || || || | ||| |||| ||| ||| |||||| Sbjct 1106276 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 1106335 Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 49940 || |||||||| | || | ||||||||||||||| || | || ||| | || || Sbjct 1106336 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 1106395 Query 49941 AATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTAT-CATC 49999 || ||||| || ||||| ||||| || || | |||| | |||| | | | || || Sbjct 1106396 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAA-AGAGACTGATGGATT 1106454 Query 50000 TAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059 | |||| ||||| ||||| || || |||| | | | || | | |||| ||||| Sbjct 1106455 TGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGC 1106514 Query 50060 TTT---AAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGA 50116 ||| || || || | ||| || | || Sbjct 1106515 TTTGAAAAGAAACTCCCGCTGGTCA---GGATCACTGATGTAAGTGTCTATCAGTAGGCT 1106571 Query 50117 ATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTC 50176 ||||| ||||| || ||| || || || |||||||| |||||| || ||||| Sbjct 1106572 GTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTC 1106631 Query 50177 TGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGA 50236 | | ||| | || || |||| |||| ||||||| ||| ||||||||| || || Sbjct 1106632 GGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGA 1106691 Query 50237 TGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC 50296 || | ||||||||| || || || | |||||||| ||| | ||| || | || | Sbjct 1106692 GGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAGC 1106751 Query 50297 CCA---AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTAC 50353 ||| || || || ||| ||||| || || ||||| | ||||| || || ||| | Sbjct 1106752 CCAGTCAG-TTAAATCTCG--AGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTC 1106808 Query 50354 GGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTT 50413 | ||| |||||||||| | |||||| || ||||| || || | ||| | || || Sbjct 1106809 AGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATT 1106868 Query 50414 AGTATT 50419 || ||| Sbjct 1106869 AGGATT 1106874 >seq453 Length=2394413 Score = 138 bits (152), Expect = 2e-27 Identities = 394/606 (65%), Gaps = 14/606 (2%) Strand=Plus/Plus Query 49821 AAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880 ||||| ||||||||| |||||| || || || | ||| |||| ||| ||| |||||| Sbjct 11728 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 11787 Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 49940 || |||||||| | || | ||||||||||||||| || | || ||| | || || Sbjct 11788 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 11847 Query 49941 AATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTAT-CATC 49999 || ||||| || ||||| ||||| || || | |||| | |||| | | | || || Sbjct 11848 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAA-AGAGACTGATGGATT 11906 Query 50000 TAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059 | |||| ||||| ||||| || || |||| | | | || | | |||| ||||| Sbjct 11907 TGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGC 11966 Query 50060 TTT---AAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGA 50116 ||| || || || | ||| || | || Sbjct 11967 TTTGAAAAGAAACTCCCGCTGGTCA---GGATCACTGATGTAAGTGTCTATCAGTAGGCT 12023 Query 50117 ATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTC 50176 ||||| ||||| || ||| || || || |||||||| |||||| || ||||| Sbjct 12024 GTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTC 12083 Query 50177 TGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGA 50236 | | ||| | || || |||| |||| ||||||| ||| ||||||||| || || Sbjct 12084 GGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGA 12143 Query 50237 TGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC 50296 || | ||||||||| || || || | |||||||| ||| | ||| || | || | Sbjct 12144 GGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAGC 12203 Query 50297 CCA---AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTAC 50353 ||| || || || ||| ||||| || || ||||| | ||||| || || ||| | Sbjct 12204 CCAGTCAG-TTAAATCTCG--AGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTC 12260 Query 50354 GGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTT 50413 | ||| |||||||||| | |||||| || ||||| || || | ||| | || || Sbjct 12261 AGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATT 12320 Query 50414 AGTATT 50419 || ||| Sbjct 12321 AGGATT 12326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984471914650350