Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tetranychus_20urticae_20[refseq_20GCF_5F000239435.1_202011-12-20]
641 sequences; 90,828,597 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq444 150 4e-31
seq468 138 2e-27
seq453 138 2e-27
>seq444
Length=5217058
Score = 150 bits (166), Expect = 4e-31
Identities = 203/277 (73%), Gaps = 8/277 (3%)
Strand=Plus/Plus
Query 192265 ATGATA-AATTAATAGATATAGAGTATACTTTTTAGTTTAATAAT----ACCACCTCTAA 192319
|||||| |||||| ||| || |||| ||||| | ||| ||| |||||| | ||
Sbjct 3541526 ATGATACAATTAA-AGAAATTT-GTAT-CTTTTAATTTTCTTAAAGTTGACCACCACGAA 3541582
Query 192320 GACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTT 192379
| |||||||||||||||||||| | ||||| || || || ||||| | |||||
Sbjct 3541583 GTCGTAATACTAAATGTAAAGTTGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTTCGAC 3541642
Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439
|||| || | ||||||||||| ||||| | | ||||||||||||||| |||||||| |
Sbjct 3541643 CATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGGGATTCCTTCCT 3541702
Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499
| ||||| |||||| || ||||| || | || || | ||| ||||| | || |
Sbjct 3541703 TGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGTTCAACTTCCAAGGTGA 3541762
Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||||||||||| | ||||| | || || |||||
Sbjct 3541763 TGGTTTTACCAGTGAGGGTTTTGACGAAAATTTGCAT 3541799
Score = 127 bits (140), Expect = 4e-24
Identities = 138/183 (75%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||||||||||||||||||||| ||| |||| || | |||||| ||||| ||||| || |
Sbjct 3542193 GATATTATAATCAGATAATGTACGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAAACG 3542252
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||||| || || || || ||||| || || || |||||| || || || || |
Sbjct 3542253 TTGTTGGTCGGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGT 3542312
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||| || | ||| ||||| | |||||||||||| ||||| | ||||||| || || ||
Sbjct 3542313 ATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGGGTTTTAACGAAAATTTG 3542372
Query 192534 CAT 192536
|||
Sbjct 3542373 CAT 3542375
Score = 123 bits (136), Expect = 5e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||| || || || || || | |||| ||||| ||||||||||||
Sbjct 3541798 ATACCACCACGAAGTCGCAAGACCAAGTGAAGGGTAGATTCTTTTTGAATATTATAATCA 3541857
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || || | || || | ||||||||||| ||||| || | ||||| ||||||
Sbjct 3541858 CTGAGAGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATCAAACGTTGTTGGTCAGGT 3541917
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||| ||||| ||||| ||| || || |||| ||| || | |||
Sbjct 3541918 GGGATACCTTCTTTGTCTTGGATTTTGGCTTTCACGTTTTCAATAGTATCAGAAGGTTCA 3541977
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || || |||||||| |||||||| | ||||| | || || ||||||
Sbjct 3541978 ACCTCAAGTGTAATGGTCTTACCAGTAAGAGTTTTTACGAAAATTTGCATT 3542028
Score = 113 bits (124), Expect = 9e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||| ||||| || || || | |||| |||||| || || |||||
Sbjct 3542374 ATACCACCACGAAGTCGTAAGACCAAGTGAAGGGTAGACTCTTTTTGAATGTTGTAATCG 3542433
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || ||| |||| || | ||||||||||| ||||| || | ||||||||| |||
Sbjct 3542434 CTCAGGGTACGTCCATCTTCAAGCTGTTTACCAGCGAAGATCAAACGCTGTTGATCGGGT 3542493
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| || || ||| ||||| |||| || || | |||
Sbjct 3542494 GGGATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGATGGTTCA 3542553
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || |||||||| ||||| | || || | || || |||||
Sbjct 3542554 ACCTCAAGGGTGATGGTTTTTCCAGTAAGAGTCTTGACGAAAATTTGCAT 3542603
>seq468
Length=1118636
Score = 138 bits (152), Expect = 2e-27
Identities = 394/606 (65%), Gaps = 14/606 (2%)
Strand=Plus/Plus
Query 49821 AAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880
||||| ||||||||| |||||| || || || | ||| |||| ||| ||| ||||||
Sbjct 1106276 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 1106335
Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 49940
|| |||||||| | || | ||||||||||||||| || | || ||| | || ||
Sbjct 1106336 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 1106395
Query 49941 AATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTAT-CATC 49999
|| ||||| || ||||| ||||| || || | |||| | |||| | | | || ||
Sbjct 1106396 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAA-AGAGACTGATGGATT 1106454
Query 50000 TAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059
| |||| ||||| ||||| || || |||| | | | || | | |||| |||||
Sbjct 1106455 TGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGC 1106514
Query 50060 TTT---AAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGA 50116
||| || || || | ||| || | ||
Sbjct 1106515 TTTGAAAAGAAACTCCCGCTGGTCA---GGATCACTGATGTAAGTGTCTATCAGTAGGCT 1106571
Query 50117 ATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTC 50176
||||| ||||| || ||| || || || |||||||| |||||| || |||||
Sbjct 1106572 GTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTC 1106631
Query 50177 TGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGA 50236
| | ||| | || || |||| |||| ||||||| ||| ||||||||| || ||
Sbjct 1106632 GGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGA 1106691
Query 50237 TGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC 50296
|| | ||||||||| || || || | |||||||| ||| | ||| || | || |
Sbjct 1106692 GGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAGC 1106751
Query 50297 CCA---AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTAC 50353
||| || || || ||| ||||| || || ||||| | ||||| || || ||| |
Sbjct 1106752 CCAGTCAG-TTAAATCTCG--AGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTC 1106808
Query 50354 GGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTT 50413
| ||| |||||||||| | |||||| || ||||| || || | ||| | || ||
Sbjct 1106809 AGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATT 1106868
Query 50414 AGTATT 50419
|| |||
Sbjct 1106869 AGGATT 1106874
>seq453
Length=2394413
Score = 138 bits (152), Expect = 2e-27
Identities = 394/606 (65%), Gaps = 14/606 (2%)
Strand=Plus/Plus
Query 49821 AAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880
||||| ||||||||| |||||| || || || | ||| |||| ||| ||| ||||||
Sbjct 11728 AAACAGGCAAAATCACAATGTAATCCTTCATCTCGAGAGATAAGTTCGTTAGAGAAAGTT 11787
Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 49940
|| |||||||| | || | ||||||||||||||| || | || ||| | || ||
Sbjct 11788 AAACCTGGCATCAGGCCACGCTTTTTAAGCCAAAAGATAGCGGCGAAAGAGCCTGAGAAA 11847
Query 49941 AATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTAT-CATC 49999
|| ||||| || ||||| ||||| || || | |||| | |||| | | | || ||
Sbjct 11848 AAGATACCTTCAACACATGCAAAGGCAATCAATCTTTCGGCAAA-AGAGACTGATGGATT 11906
Query 50000 TAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059
| |||| ||||| ||||| || || |||| | | | || | | |||| |||||
Sbjct 11907 TGCAGTCCAGTTTATTGCCCATTCAGCCTTTTGAGCAACACATGGGACAGTTTCAATAGC 11966
Query 50060 TTT---AAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGA 50116
||| || || || | ||| || | ||
Sbjct 11967 TTTGAAAAGAAACTCCCGCTGGTCA---GGATCACTGATGTAAGTGTCTATCAGTAGGCT 12023
Query 50117 ATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTC 50176
||||| ||||| || ||| || || || |||||||| |||||| || |||||
Sbjct 12024 GTACATCTCAGAGTGCACATTCTCAATCGCAATTTGAAAACCATAAAAACATCGAGCTTC 12083
Query 50177 TGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGA 50236
| | ||| | || || |||| |||| ||||||| ||| ||||||||| || ||
Sbjct 12084 GGTAATCTGGATATCACGAATAAATCTTTCAGCTAAATTTTCATTTACAATACCGTCTGA 12143
Query 50237 TGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC 50296
|| | ||||||||| || || || | |||||||| ||| | ||| || | || |
Sbjct 12144 GGCAGAGAAGAATGCCAACACATAGCTGATAAAATGACGTTCTTCATCGTTAAGCTTAGC 12203
Query 50297 CCA---AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTAC 50353
||| || || || ||| ||||| || || ||||| | ||||| || || ||| |
Sbjct 12204 CCAGTCAG-TTAAATCTCG--AGATAAGTCAACCTCTTCAACAGTCCAGAACGAGGCTTC 12260
Query 50354 GGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTT 50413
| ||| |||||||||| | |||||| || ||||| || || | ||| | || ||
Sbjct 12261 AGCTTTCTTATACATTTCCCAAATATCAGGATACTCAATAGGGAACACAACAAAACGATT 12320
Query 50414 AGTATT 50419
|| |||
Sbjct 12321 AGGATT 12326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984471914650350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |